BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD07FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1459 0.0
>3x_Contig1801
Length = 57606
Score = 1459 bits (736), Expect = 0.0
Identities = 824/842 (97%), Gaps = 9/842 (1%)
Strand = Plus / Plus
Query: 92 taagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagcctgc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20531 taagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagcctgc 20590
Query: 152 tagtgtggatcctgctacgatcaagaatgagcaaaccacaaggaaagaggtcaagaaacg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20591 tagtgtggatcctgctacgatcaagaatgagcaaaccacaaggaaagaggtcaagaaacg 20650
Query: 212 tagatcaagatttggtaaagttaccaatacacatatggctggtatattgagagattattc 271
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20651 tagatcaagaaagggtaaagttaccaatacacatatggctggtatattgagagattattc 20710
Query: 272 cgatagggtatgaagatacctactttttataatgaacgtattctacatataacccaaatt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20711 cgatagggtatgaagatacctactttttataatgaacgtattctacatataacccaaatt 20770
Query: 332 aaaatatgaccagtgcgttatatataaataatatacagaaagaccagaacgagtgctcta 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20771 aaaatatgaccagtgcgttatatataaataatatacagaaagaccagaacgagtgctcta 20830
Query: 392 gtcgtgctttctcttttttttgctaactttcttcaaatctttatcctcgtaatacccagt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20831 gtcgtgctttctcttttttttgctaactttcttcaaatctttatcctcgtaatacccagt 20890
Query: 452 tgcgaaatgtctagtcttgagacccttaaccttcaacacatcctttctatccactcttac 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20891 tgcgaaatgtctagtcttgagacccttaaccttcaacacatcctttctatccactcttac 20950
Query: 512 cttagaataatcaatgcttggaatctttgcagtttcgcttatggtaaagatcttatcaaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20951 cttagaataatcaatgcttggaatctttgcagtttcgcttatggtaaagatcttatcaaa 21010
Query: 572 tgatcttgatgcagatgaatcgacggtcaactttgtcttatctacaggagtcaataatgt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21011 tgatcttgatgcagatgaatcgacggtcaactttgtcttatctacaggagtcaataatgt 21070
Query: 632 caattcagaagaagaagatgcaccagaagtggaattttcttgttggatttcctccttcac 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21071 caattcagaagaagaagatgcaccagaagtggaattttcttgttggatttcctccttcac 21130
Query: 692 agagaaatgtttacctttttgttcgatgccagtttccgactccgctgtgaaatcaatagg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21131 agagaaatgtttacctttttgttcgatgccagtttccgactccgctgtgaaatcaatagg 21190
Query: 752 taatttcgaaagcttagagacatctaaagaattaggaagtttgattagccaaagntcctt 811
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||
Sbjct: 21191 taatttcgaaagcttagagacatctaaagatttaggaagtttgataagccaaagtt-ctt 21249
Query: 812 tttgctttcaagtttcttaagccttcacgaatgatttcaaatgttgtacattccttatag 871
||||| |||||| ||||| || ||||||||||||||||||||| |||||||| ||||||
Sbjct: 21250 tttgc-ttcaag-ttctt-aggcttcacgaatgatttcaaatg-tgtacatttcttata- 21304
Query: 872 gttttcaggtgggaacgaaaacgtnccgttacagnttctcgatgatccatcattatcgct 931
|||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 21305 gttttcaggt-ggaacgaaaacgt-ccgttacagtttct-gatgatccatcattatcgct 21361
Query: 932 gt 933
||
Sbjct: 21362 gt 21363
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8058
Number of Sequences: 1807
Number of extensions: 8058
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)