BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD07RM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig419 603 e-172
>3x_Contig419
Length = 1943
Score = 603 bits (304), Expect = e-172
Identities = 353/366 (96%), Gaps = 3/366 (0%)
Strand = Plus / Minus
Query: 301 tatggtatctgcatgttatctgtt-cttcgtaatctaaggaatgaatcagtagacaggca 359
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1943 tatggtatctgcatgt-atctgtttcttcgtaatctaaggaatgaatcagtagacaggca 1885
Query: 360 cagaaaacggctgcaaaaaacctaaggaacggccacaattattgaaatgaaattaaacct 419
|||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 caganacgggctgcanaaaacctaaggaacggccacaattattgaaatgaaattaaacct 1825
Query: 420 tagatgtctatcggctaaaatgagtgacataatgcctttgatttaagtttaaggctaagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1824 tagatgtctatcggctaaaatgagtgacataatgcctttgatttaagtttaaggctaggt 1765
Query: 480 tcagtgttcatggtggtccagtccactggatgaagggtcagtttcagctcactggaatga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tcagtgttcatggtggtccagtccactggatgaagggtcagtttcagctcactggaatga 1705
Query: 540 ccgttttgc-acacaatatgccgtagaatagttcgtttcactccacagttgatagggaga 598
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1704 ccgttttgcaacacaatatgccgtagaatagttcgtttcactccagagttgatagggaga 1645
Query: 599 accaattctgggccgccttgacttttgcattgattagttgttaactgataatgtctgatc 658
|| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1644 acgaattctgggcggtcttgacttttgcattgattagttgttaactgatagtgtctgatc 1585
Query: 659 tttaga 664
||||||
Sbjct: 1584 tttaga 1579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6650
Number of Sequences: 1807
Number of extensions: 6650
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)