BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD08FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig864 961 0.0
>3x_Contig864
Length = 2808
Score = 961 bits (485), Expect = 0.0
Identities = 494/497 (99%)
Strand = Plus / Minus
Query: 91 tgagtcataccaccttgcaagatctacggctacttactcaacttgaatatcacatggcaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgagtcataccaccttgcaagatctacggctacttactcaacttgaatatcacatggcaa 445
Query: 151 tggagtctgtctttcataataaaaatacacgttcgccttctttgcatgatgaatcgttgg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggagtctgtctttcataataaaaatacacgttcgccttctttgcatgatgaatcgttgg 385
Query: 211 aggcattattgactcttttaccaacagagaagtttggcatcccatggactaataatatgg 270
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggcaacaatgactcttttaccaacagagaagtttggcatcccatggactaataatatgg 325
Query: 271 atcttgataaatggatgatctcttggactatcgcgttacaaaacataaaagttcagaatg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcttgataaatggatgatctcttggactatcgcgttacaaaacataaaagttcagaatg 265
Query: 331 acccgtggtgcttcaaatcaacattattatattacaattttgctcgaatgcatatcaaca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acccgtggtgcttcaaatcaacattattatattacaattttgctcgaatgcatatcaaca 205
Query: 391 caaaggccctattgcagggcaagaaatccaccctgctggatagtttagaaaatgttgagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caaaggccctattgcagggcaagaaatccaccctgctggatagtttagaaaatgttgagc 145
Query: 451 ttattaagctatggcatccgcactctaatagttccgaaattaaagaatcagcagacagta 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttattaagctatggcatccgcactctaatagttccgaaattaaagaatcagcagacagta 85
Query: 511 cggagctgtctgctacgaaggaaatttcacgttcatcagccttggcactactcaagttgg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 cggagctgtctgctacgaaggaaatttcacgttcatcagccttggcactactcaagttgg 25
Query: 571 caactaaagataaagac 587
|||||||||||||||||
Sbjct: 24 caactaaagataaagac 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7030
Number of Sequences: 1807
Number of extensions: 7030
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)