BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig462 1179 0.0
>3x_Contig462
Length = 1492
Score = 1179 bits (595), Expect = 0.0
Identities = 767/808 (94%), Gaps = 14/808 (1%)
Strand = Plus / Plus
Query: 48 tcgaagtcttgaagacttacgaggagaaagatgggttgtccgtttctcagttgatggact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 tcgaagtcttgaagacttacgaggagaaagatgggttgtccgtttctcagttgatggact 148
Query: 108 ctaagacccgtggtggtttgacttacaacgactttttgattttaccagggaaggtcaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ctaagacccgtggtggtttgacttacaacgactttttgattttaccagggaaggtcaact 208
Query: 168 tcccatcttctcaagtcactttgcagaccaaattgactaagaagatttctttgaacgctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcccatcttctcaagtcactttgcagaccaaattgactaagaagatttctttgaacgctc 268
Query: 228 catttgtgtcttctcctatggataccgttactgaagctgaaatggctatccatattgctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 catttgtgtcttctcctatggataccgttactgaagctgaaatggctatccatattgctt 328
Query: 288 tgttgggtggtattggtatcattcaccacaattgttctgccgaagaacaagctgagatgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgttgggtggtattggtatcattcaccacaattgttctgccgaagaacaagctgagatgg 388
Query: 348 tcagaaaggttaagaaatacgaaaacgggttcattaatcaacctatcgtcatttctccag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcagaaaggttaagaaatacgaaaacgggttcattaatcaacctatcgtcatttctccag 448
Query: 408 agaccaccgtcgctgaagccaaaaaaatgaagcaacaattcggttttgctggtttcccag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agaccaccgtcgctgaagccaaaaaaatgaagcaacaattcggttttgctggtttcccag 508
Query: 468 ttactggtatgtgttttccactatagcttgcaagggatgtaattcagtctagata-ggaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 509 ttactggtatgtgttttccactatagcttgcaagggatgtaattcagtctagaaagggaa 568
Query: 527 agatagtaccttggcacgtgagtttttatttctctaggttttccctatcngtcttctcac 586
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 569 agatagtaccttggcacgtgagtttttatttctcttggttttccctatcgttcttctcac 628
Query: 587 tatatgatgatttactttactattataataaacttcgttctactgatttgatcaaacgat 646
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 629 tatatgatgattaactttactattataataactttcgttctactgatttgatcaaacgat 688
Query: 647 cggggtagaggacaatatantctgacttttgttnttaaaaagaaaaccgagaaggccagg 706
| ||||||| ||||||||| ||||||||||||| | ||||||||||| ||||| || | |
Sbjct: 689 c-gggtagaagacaatata-tctgacttttgttataaaaaagaaaacagagaaagcga-g 745
Query: 707 accaggatagccaatgggagatatcaaccctgtacacccattcataaatcctatcttatc 766
| || || ||||||| ||||||||||| |||||||| |||||||||||| |||||| ||
Sbjct: 746 aacaagagagccaat-ggagatatcaa-cctgtaca-ccattcataaat-ctatctcat- 800
Query: 767 cttgaagaccgggattgttcccttgcaaataattccttccgcccaagaaccaattaccta 826
||||| || | ||||||||||| ||||||||| |||| ||||| | ||| |||||| |
Sbjct: 801 cttgatga-ctggattgttccc-tgcaaataa-tcctcccgccaagaaacaaattactaa 857
Query: 827 cctttattatctcatgaactttaaaaaa 854
| |||||||||||||||||||| ||||
Sbjct: 858 c--ttattatctcatgaactttagaaaa 883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6521
Number of Sequences: 1807
Number of extensions: 6521
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)