BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD10RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 946 0.0
>3x_Contig1659
Length = 17570
Score = 946 bits (477), Expect = 0.0
Identities = 519/528 (98%), Gaps = 5/528 (0%)
Strand = Plus / Plus
Query: 45 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12177 tatgatttgtgtagaggtagcagtcataagcagagaggaaaatcttatactctcacgtga 12236
Query: 105 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12237 tcagaaacagtagccacttcatcggagtccgaactgataacagttggtctttgatctttt 12296
Query: 165 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12297 atgtcagctttcaaagccaaagcatagctgtatgcgttaacggatggttgtgtcttgtat 12356
Query: 225 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12357 tgtaaacccaaagtatgtagttgttttgggaaagttgtagatttgatggttttctttgga 12416
Query: 285 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417 atgtagcacttagaagaagtgtttaacaatttaatagagttggtgaacattttttcttga 12476
Query: 345 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 tagttttgtgtgtaagtgatgctttttgatgaaatctgttgctattcaatagacttttga 12536
Query: 405 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 ttgatgaggtgggagtgaatataatatacaatataaaagaacaacagatgacatccataa 12596
Query: 465 gttacaagacactcaactatgaaccagctccttatatatattttttctttgacccaaaga 524
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 12597 gttacaagacactcaactatgaaccagctccttatatata-tttttccttgaaccaaaga 12655
Query: 525 tcccacatgttttttttccaagtttcaaagggccattggnccgtaacc 572
||||||||| || |||||| ||||| |||||||||||| ||||||||
Sbjct: 12656 tcccacatg--ttctttccaggtttc-aagggccattgg-ccgtaacc 12699
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,132
Number of Sequences: 1807
Number of extensions: 11132
Number of successful extensions: 316
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)