BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZD11FM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1451                                                        1292   0.0  

>3x_Contig1451 
          Length = 8346

 Score = 1292 bits (652), Expect = 0.0
 Identities = 661/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 87  taaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaatta 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaatta 605

                                                                       
Query: 147 cctgttgcgaggtgttgccattctctgatgacacttgttgtaacaaactggaaagcctct 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctgttgcgaggtgttgccattctctgatgacacttgttgtaacaaactggaaagcctct 545

                                                                       
Query: 207 tcttccttttttttgcatcctctttcacagatccatttttattctttgaacggcgtttat 266
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcttcctttcttctgcatcctctttcacagatccatttttattctttgaacggcgtttat 485

                                                                       
Query: 267 tagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttatatt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttatatt 425

                                                                       
Query: 327 aataagcagtcgagccagaatactattgtatgctcatctgtcaatttgccttttttatgt 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aataagcagtcgagccagaatactattgtatgctcatctgtcaatttgccttttttatgt 365

                                                                       
Query: 387 cctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatattat 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatattat 305

                                                                       
Query: 447 acgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatatgac 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatatgac 245

                                                                       
Query: 507 tatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcggcga 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcggcga 185

                                                                       
Query: 567 atttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaacttttgct 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaacttttgct 125

                                                                       
Query: 627 gaatatctgaggctatctcaaacacggtgggaacatcttcgttggaattaccactatttt 686
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gaatatctgaagctatctcaaacacggtgggaacatcttcgttggaattaccactatttt 65

                                                                       
Query: 687 ctgatccttttggttcaggggtaacaattggttgtgtcgaaatcatcttttgaagtgatg 746
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ctgatccttttggttcaggggtaacaattggttgtgtcgaaatcatcttttgaagtgatg 5

               
Query: 747 actg 750
           ||||
Sbjct: 4   actg 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6917
Number of Sequences: 1807
Number of extensions: 6917
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)