BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD12FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1616 0.0
>3x_Contig1760
Length = 27266
Score = 1616 bits (815), Expect = 0.0
Identities = 857/870 (98%), Gaps = 2/870 (0%)
Strand = Plus / Minus
Query: 87 ttctagagtttttcaccgggtcctccagtcttagtcttctaatctcagcgatgtcttcag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26154 ttctagagtttttcaccgggtcctccagtcttagtcttctaatctcagcgatgtcttcag 26095
Query: 147 gcttcaaatggtaggtcttctcacccttctcatgtaacactggcgctaccctcgatatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26094 gcttcaaatggtaggtcttctcacccttctcatgtaacactggcgctaccctcgatatct 26035
Query: 207 ctgcgttaccnngtgnnttgtcatctataatgtcgtgccttggatcagtggccggtaaga 266
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 26034 ctgcgttaccttgcgttaggtcatctataatgtcgtgccttggatcagtggccggtaaga 25975
Query: 267 aagattttggaatcgtttctgagttagtagaaccatggatagaggatggagctggatcgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25974 aagattttggaatcgtttctgagttagtagaaccatggatagaggatggagctggatcgt 25915
Query: 327 aatatagacctgctggaatcttggctttcaaataacctttgtaattggaggcagatgatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25914 aatatagacctgctggaatcttggctttcaaataacctttgtaattggaggcagatgatt 25855
Query: 387 ttggattgtaaatggtagctggtccaacgatcttaggtaacttacctgatttatcaatta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25854 ttggattgtaaatggtagctggtccaacgatcttaggtaacttacctgatttatcaatta 25795
Query: 447 tctttgaaagatccttggccgcacgggcgctggtcgaaaatagtctcaccatactgtagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25794 tctttgaaagatccttggccgcacgggcgctggtcgaaaatagtctcaccatactgtagc 25735
Query: 507 gaatatgtcaaatgtaatttctacagcgtaattggggattataagcctggtgtaagggtc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25734 gaatatgtcaaatgtaatttctacagcgtaattggggattataagcctggtgtaagggtc 25675
Query: 567 taaaacttgttatttaaactatcaatcaccatgtttcgcactgcagactctaaatctttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25674 taaaacttgttatttaaactatcaatcaccatgtttcgcactgcagactctaaatctttc 25615
Query: 627 agtttgatgctttcaaatttttcagatagaaatcctgatgagacagacaggattagtatg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25614 agtttgatgctttcaaatttttcagatagaaatcctgatgagacagacaggattagtatg 25555
Query: 687 ggaaaacagtttatttcgagaaatataggattattctagtggatatacctacctgaagat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25554 ggaaaacagtttatttcgagaaatataggattattctagtggatatacctacctgaagat 25495
Query: 747 gcttctatataatatcgattagtactatgaatgagtgtgagctgacctgttaaaataggg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25494 gcttctatataatatcgattagtactatgaatgagtgtgagctgacctgttaaaataggg 25435
Query: 807 cttatattggcgatattatgcagcttttagaagtgccaatttggactattctgtatcttt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25434 cttatattggcgatattatgcagcttttagaagtgccaatttggactattctgtatcttt 25375
Query: 867 ggtcacgtgaaagcccgttaatnccaacatcaacatcaaatgtcgcttcctattcac-ac 925
|||||||||||||| | |||| |||||||||||||||||||||| ||||||||||| ||
Sbjct: 25374 tgtcacgtgaaagccgggtaatcccaacatcaacatcaaatgtcg-ttcctattcacaac 25316
Query: 926 aggaagagctgaaaggctatgagatgggac 955
||||||||||||||||||||||||||||||
Sbjct: 25315 aggaagagctgaaaggctatgagatgggac 25286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5682
Number of Sequences: 1807
Number of extensions: 5682
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)