BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZD12RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 954 0.0
>3x_Contig1760
Length = 27266
Score = 954 bits (481), Expect = 0.0
Identities = 517/525 (98%), Gaps = 3/525 (0%)
Strand = Plus / Plus
Query: 55 ctccttgcattaatagaaaagtcgctctcagggtttcttatcggatctgctattccctta 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24361 ctccttgcattaatagaaaagtcgctctcagggtttcttatcggatctgctattccctta 24420
Query: 115 tttgcatttgaagacatatccaaagcacccactatcgcaagctctcctgactggtcatgg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24421 tttgcatttgaagacatatccaaagcacccactatcgcaagctctcctgactggtcatgg 24480
Query: 175 aaatcaagtaaaaacggaggaataatggttttacgctcattcaacgataaggaagttaat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24481 aaatcaagtaaaaacggaggaataatggttttacgctcattcaacgataaggaagttaat 24540
Query: 235 tggatttcaggttcattcaagtcaagctctctgtcgccgccttcgtacggatcttgctga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24541 tggatttcaggttcattcaagtcaagctctctgtcgccgccttcgtacggatcttgctga 24600
Query: 295 gctggtatatattcatcatcgtgaatgacgttatcaaaatcatcatcattatcgtaccaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24601 gctggtatatattcatcatcgtgaatgacgttatcaaaatcatcatcattatcgtaccaa 24660
Query: 355 tttctatcttgtgcagtaaaatccttggcgtcctttatatcttccacatcactaccttct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24661 tttctatcttgtgcagtaaaatccttggcgtcctttatatcttccacatcactaccttct 24720
Query: 415 gcatcgataagtgtgcctttggtcgcttcttctttttttaccatgaccactggttcagag 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24721 gcatcgataagtgtgcctttggtcgcttcttctttttttaccatgaccactggttcagtg 24780
Query: 475 ttttctgaaaactcattcaattttgctgcagtttgcttcgtaatacgtttc-aagtcaaa 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24781 ttttctgaaaactcattcaattttgctgcagtttgcttcgtaatacgtttcaaagtcaaa 24840
Query: 534 ggcctgtggaa-tttggtttcacttgaacctt-acagtaaaaagc 576
||| ||| ||| |||||||||||||| ||||| |||||| |||||
Sbjct: 24841 ggcttgttgaattttggtttcacttgtaccttcacagtagaaagc 24885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)