BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE01RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1561 1374 0.0
>3x_Contig1561
Length = 10959
Score = 1374 bits (693), Expect = 0.0
Identities = 796/823 (96%), Gaps = 6/823 (0%)
Strand = Plus / Plus
Query: 48 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagaacgttgtaaaatattcaaatcaactttaaccttctcgtcatcgagagattccaaaa 584
Query: 108 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggggcaaagtcctgtataaatcagcatttttggagttaagcctacagcggtaaaattctt 644
Query: 168 tagccactgcctcaagtttctcaacaaactttgagcccgaagctgaagatctctccaatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagccactgcctcaagtttctcaacaaactttgagcccgaagctgaagatctctccaatt 704
Query: 228 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cttgattaagcctgtcatgtgtcaatgaggtgtttggcttgacacgagtctcgcctatcc 764
Query: 288 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acgttgtaacaatatcaaagttttcaggcttcagttcatatattatactgacagtgtttg 824
Query: 348 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acagtttctcgggctgcaaacttaagaattcattcagagcggctggaagcaaaccaacag 884
Query: 408 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcttctgtggcatgaagacagcgctagatcttttcctagctcttctatccaaagatgaac 944
Query: 468 cttcttcaatatggactgttacatcaacaacatgaaatcctaattc-aggttaccgttgt 526
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 945 cttcttcaatatggactgttacatcaacaacatgaaatcctaattcaaggttaccgttgt 1004
Query: 527 cagtgtctctt-aatggaccgcataatcagaaacttcaccagtttctgaaatggncatga 585
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1005 cagtgtctcttaaatggaccgcataatcagaaacttcaccagtttctgaaatggcaatga 1064
Query: 586 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cattttcataagtacgccttgttttgctttgctcttctgaaagcaatacaggtgcaaaac 1124
Query: 646 tatctctctnctttgtacgggtctgagggtctaaatattcatcacttaagaaattattgt 705
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 tatctctctcctttgtacggtcctgagggtctaaatattcatcacttaagaaattattgt 1184
Query: 706 ctctcaaaattgaatcaatctcagtttttgggatcgctcacatcgcctaattgccagaac 765
||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||
Sbjct: 1185 ctctcaaaattgaatcaatctcagttttt-ggatcgttcacatcgcctaattgcgag-ac 1242
Query: 766 aggagtcccaagggattgcaaagaattgattggcc-gcgccttgatgctagcaacaaaaa 824
| |||| |||| || ||||||||| ||||||||| ||| ||||||||||||||| ||||
Sbjct: 1243 aagagtaccaaagggatgcaaagaagtgattggccagcg-cttgatgctagcaacgaaaa 1301
Query: 825 ctttattcgaattcttatcagatttttcgacgaaatccctagg 867
|||||||| || |||||||| ||||||||||| ||| ||||
Sbjct: 1302 ctttattcagatacttatcagcattttcgacgaagtccttagg 1344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6657
Number of Sequences: 1807
Number of extensions: 6657
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)