BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE02RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig210 1404 0.0
>3x_Contig210
Length = 1662
Score = 1404 bits (708), Expect = 0.0
Identities = 814/846 (96%), Gaps = 4/846 (0%)
Strand = Plus / Minus
Query: 47 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tggctagagtttggagagatgggcaaaagaaagattgttttatctacagattcattagta 1212
Query: 107 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 ctggtaccattgaagagaagattttccaaagacaatcgatgaagatgagtttgagttcat 1152
Query: 167 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gtgttgtggatgaaaaggaggatgttgaacgattgttcagttcggataatttgaagcaat 1092
Query: 227 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tgttcaaacttgatacaaaaaccatatgtgatacccatgagacatataattgtaaacgct 1032
Query: 287 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtaagaatggaaagcaaattttgaaagctccggtaatgctatacggtgacgcgacttcgt 972
Query: 347 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggaatcatttgaatcacgatgcattagcaaaaacaaacgaccatctcttgaaaaatgaat 912
Query: 407 tcaatcacaaagacatcagttttgcatttcaatatatatcgcattgatctttcatttttt 466
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 911 tcaatcacaaagacatcagttttgcatgtcaatatatatcgcattgatctttcatttttt 852
Query: 467 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 taaagtacattttaatttcactactatatagacgcattaataaattcggtttctgggcgg 792
Query: 527 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttcggaacagataactcggttaatatgaagaggcaactcaagttttcgagatctttgagc 732
Query: 587 cgatcctaatttatattaatacagtttgaatatggatttccatattaaagctaattttat 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cgatcctaatttatataaatacagtttgaatatggatttccatattaaagctaattttat 672
Query: 647 tacgagtattgttgaatagagttacatgaacatatgtacctacccctanaataaagtagt 706
||||||||| |||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct: 671 tacgagtatgtttgaatagagttacatgaacatatgtactta-ccctagaataaggtagt 613
Query: 707 ttaagatttataagtgggtcatcaaatcatcaatgtctgcgaatttaacgggg-acaggg 765
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 612 ttaagaattataagtgtgtcatcaaatcatcaatgtctgcgaattcaacggggaacaggt 553
Query: 766 cgttaggagaggggttattacccttactaatgccccttgacagaaagttgttttcgatga 825
|||||||||||||||||||||| | |||| |||| || ||||| ||||||| |||||||
Sbjct: 552 cgttaggagaggggttattaccttcactagtgccactgaacagagagttgttatcgatga 493
Query: 826 tgttttggttcaccctatttgattgtttcaatggcctgggtggaagtcattggtgaatga 885
|||||||||||||| | |||| ||| ||| || | |||||||||||| |||||| |||
Sbjct: 492 tgttttggttcaccagagttgagtgtgtcagtg--ccgggtggaagtcagtggtgattga 435
Query: 886 cgggtt 891
||||||
Sbjct: 434 cgggtt 429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8199
Number of Sequences: 1807
Number of extensions: 8199
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)