BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE03FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1590 0.0
>3x_Contig1384
Length = 9372
Score = 1590 bits (802), Expect = 0.0
Identities = 836/846 (98%), Gaps = 1/846 (0%)
Strand = Plus / Plus
Query: 88 tgacttgaaaataactatcgaaaatgccaagcttgtccttctaggaatagccttcttctc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8040 tgacttgaaaataactatcgaaaatgccaagcttgtccttctaggaatagccttcttctc 8099
Query: 148 ttgcgtttccccactcgagaggcatttttattgctcgcttacgtttatccttcctgcacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8100 ttgcgtttccccactcgagaggcatttttattgctcgcttacgtttatccttcctgcacc 8159
Query: 208 tttaaattcctatatggaattttttcgtaatgtccaaaattgcaaccattttaaaggtaa 267
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 tttaaattccgatatggaattttttcgtaatgtccaaaattgcaaccattttaaaggtaa 8219
Query: 268 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 aaaagatcaatgaaggatgaagaatgaaaagaatcaacaactcggtctcttcattcttac 8279
Query: 328 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8280 tgttactatacactactcctagattctgatagtggtagcatcaatggtgaagtaccagta 8339
Query: 388 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8340 actaaagatgagggatccaacagagttacaacctgtgcattcattgccatctttacgatc 8399
Query: 448 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400 cggtactaaatcaatagcaagcgatgaggcatctgagcctaaacaattacattcagatag 8459
Query: 508 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8460 caggattaactgtggtgatgtcgctgatcctgatatacagtatattggacctaatacaga 8519
Query: 568 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8520 aaaggtagagtccttgagtcagaaaatttcaaagataagcagtctccgagataagtccct 8579
Query: 628 tgttgttcccagatcagaaagaagaggattgcttgcgaacctagcgataatcccggaata 687
||||||||||| |||| ||| || || ||| ||| |||||||||||||||||||||||||
Sbjct: 8580 tgttgttcccatatcataaataatagtatttctttcgaacctagcgataatcccggaata 8639
Query: 688 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8640 taaagactctagagagtatccacgacacttgaagtcatttatcgtacttatcattgcata 8699
Query: 748 tggagctgtcatgggtcccatgggaacttctattattttccctgcaattggtcctttagt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8700 tggagctgtcatgggtcccatgggaacttctattattttccctgcaattggtcctttagt 8759
Query: 808 agcggatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattgag 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 agcggatttcgatacatcgacgataatggtcgatgtctctgttggtatctatttattgag 8819
Query: 868 ccttggtatatttcccatatggtggtcatctttatccgaaat-gagggcagacgtactgt 926
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8820 ccttggtatatttccaatatggtggtcatctttatccgaaatagagggcagacgtactgt 8879
Query: 927 atatgt 932
||||||
Sbjct: 8880 atatgt 8885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6098
Number of Sequences: 1807
Number of extensions: 6098
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)