BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZE03RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig681                                                         1273   0.0  

>3x_Contig681 
          Length = 3369

 Score = 1273 bits (642), Expect = 0.0
 Identities = 712/731 (97%), Gaps = 4/731 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   aagtaaagtgtcatcatcagacttgacacttttggctaaaaattcaaaacacttcgaact 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1890 aagtaaagtgtcatcatcagacttgacacttttggctaaaaattcaaaacacttcgaact 1831

                                                                        
Query: 108  ttcatttgtgcatgtcttcgaaatagaaggtaagctggcatctctcaatgtgcatatcgt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1830 ttcatttgtgcatgtcttcgaaatagaaggtaagctggcatctctcaatgtgcatatcgt 1771

                                                                        
Query: 168  tctaaaaacgtttagacccaaaaactgtacatgaggttcagacatgaggataacgcgcct 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1770 tctaaaaacgtttagacccaaaaactgtacatgaggttcagacatgaggataacgcgcct 1711

                                                                        
Query: 228  gatgaatgtgagaatattagctaatacttcattgctcaacgtcgtttccttatgtctttc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1710 gatgaatgtgagaatattagctaatacttcattgctcaacgtcgtttccttatgtctttc 1651

                                                                        
Query: 288  aatgaaaagtacctcttgataatatagcatagcatgcaatagttgctctatcatatcatg 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 aatgaaaagtacctcttgataatatagcatagcatgcaatagttgctctatcatatcatg 1591

                                                                        
Query: 348  ttctatattgctgtctttacgaattccgttcgcaacaatccagttatatatctcttcttg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1590 ttctatattgctgtctttacgaattccgttcgcaacaatccagttatatatctcttcttg 1531

                                                                        
Query: 408  tactgaattgagatttcgaaagatgtccgtctggaaggaagactcaaaatccgatttgga 467
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 tactgaattgagatttcgaaggatgtccgtctggaaggaagactcaaaatccgatttgga 1471

                                                                        
Query: 468  aatcaattctctggctttgagaattactaaattggtattaatganggcctcccaggatgc 527
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1470 aatcaattctctggctttgagaattactaaattggtattaatgagggcctcccaggatgc 1411

                                                                        
Query: 528  atcatggactttncaagaagccgatgaaatgcttacaaagtgtagaatattttctacaaa 587
            |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1410 atcatggactttccaagaagccgatgaaatgcttacaaggtgtagaatattttctacaaa 1351

                                                                        
Query: 588  cactagttttgaagtgttccttttncacagtgaaagacaaagcagataggctttttagta 647
            ||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 1350 cactagttttg-agtggtccttttccacagtgaaagacaaagcagatagtctttttagta 1292

                                                                        
Query: 648  ttctaagcactattaaaaatacaagccccattttttggcatatttgagaacttttcggcc 707
            ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1291 ttctaggcactattaaaaatacgagccccattttttggcatatttgagaacttttcggcc 1232

                                                                        
Query: 708  tc-tactattttc-ctgtgactaacattttaatttaggagagttttgaatgatttcggga 765
            || |||||||||| |||| ||||||| | ||| ||||||||||||||||||| ||| |||
Sbjct: 1231 tcttactattttcgctgtaactaacaatataacttaggagagttttgaatga-ttctgga 1173

                       
Query: 766  tcggaagtttt 776
            ||| |||||||
Sbjct: 1172 tcgtaagtttt 1162


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7543
Number of Sequences: 1807
Number of extensions: 7543
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)