BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZE04RM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1660                                                        1233   0.0  

>3x_Contig1660 
          Length = 13166

 Score = 1233 bits (622), Expect = 0.0
 Identities = 673/685 (98%), Gaps = 4/685 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   atgtttattcatagttttcccaagtgctaatgtaaaactaactggatatttgggaaatgg 107
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 atgtttattcatagttt-cccaagtgctaatgtaaaactaactggatatttgggaaatgg 5839

                                                                        
Query: 108  aagatggtcagttccagaaacaaacgaaacgagacgacaactttatgtacttcagcaacc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 aagatggtcagttccagaaacaaacgaaacgagacgacaactttatgtacttcagcaacc 5899

                                                                        
Query: 168  aactcttcctcctcccagggtaccccccaaatgtccgaaaggtatgctatgggaagagta 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5900 aactcttcctcctcccagggtaccccccaaatgtccgaaaggtatgctatgggaagagta 5959

                                                                        
Query: 228  ttatttactcaataaagagaaatacattcgtgaagttatgagaaattgaaggcttttcag 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 ttatttactcaataaagagaaatacattcgtgaagttatgagaaattgaaggcttttcag 6019

                                                                        
Query: 288  ctgatgccatgttattaatgtgttatgatacaaaatattaaaggaaaactcaatatataa 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 ctgatgccatgttattaatgtgttatgatacaaaatattaaaggaaaactcaatatataa 6079

                                                                        
Query: 348  tggaagtaaattaaatgttaacagacagtgtctataataaatgctattttatgcgaataa 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 tggaagtaaattaaatgttaacagacagtgtctataataaatgctattttatgcgaataa 6139

                                                                        
Query: 408  agatctaatgctttatttatgttttattggtccttcgataaaggctgattttcctctcag 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 agatctaatgctttatttatgttttattggtccttcgataaaggctgattttcctctcag 6199

                                                                        
Query: 468  tgtgacttagaattctgcttcatcaggatactcatcatcacctcccaggtcatcatcccc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 tgtgacttagaattctgcttcatcaggatactcatcatcacctcccaggtcatcatcccc 6259

                                                                        
Query: 528  atcatcgaagtacttttcagcattgtagtcatcatcgtcgtcctcttcaaattcgtcgtc 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 atcatcgaagtacttttcagcattgtagtcatcatcgtcgtcctcttcaaattcgtcgtc 6319

                                                                        
Query: 588  ttcatcgatatcatctttattcgcttccttctcctcatttccttncttcgttttcctcat 647
            ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||
Sbjct: 6320 ttcatcgatatcatctttatcggcttccttctcctcatttcctt-cttcgttttcctcat 6378

                                                                        
Query: 648  catcatcgaacataccgttcatcttttccaaaagagcacgaactaccgntttcatcttct 707
            ||||||||| ||||||| ||||||||||||||||||||||| ||||||  ||||||||| 
Sbjct: 6379 catcatcgaccataccgctcatcttttccaaaagagcacgacctaccgc-ttcatcttc- 6436

                                     
Query: 708  ttctttagacccattcaattcaaag 732
            ||| ||||||||||||||| |||||
Sbjct: 6437 ttccttagacccattcaatccaaag 6461


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9599
Number of Sequences: 1807
Number of extensions: 9599
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)