BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE05FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig643 615 e-176
3x_Contig505 262 1e-69
>3x_Contig643
Length = 2667
Score = 615 bits (310), Expect = e-176
Identities = 341/346 (98%), Gaps = 4/346 (1%)
Strand = Plus / Plus
Query: 87 cagaaacttataaatgaataccaaattgacacagataatattgatgagaccattgaaaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 cagaaacttataaatgaataccaaattgacacagataatattgatgagaccattgaaaaa 2321
Query: 147 gtaacaaagttaatgaagcattcaaatgttttgactaacgatgatttaatcaaaatggct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 gtaacaaagttaatgaagcattcaaatgttttgactaacgatgatttaatcaaaatggct 2381
Query: 207 gtggaattcttaaaagagccgaattcagaagaggatactgcattcaccaaatttgtacta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 gtggaattcttaaaagagccgaattcagaagaggatactgcattcaccaaatttgtacta 2441
Query: 267 aatgaagccaaagttttaattattgacgaattccaagacttatatccaggtatatttaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 aatgaagccaaagttttaattattgacgaattccaagacttatatccaggtatatttaaa 2501
Query: 327 ctattaaagacattacttggtcaaaaacactttttaatatttggagatatcaatcaaagc 386
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2502 ctattaaagacattacttggtcaaaaa-actttttaatatttggagatatcaatcaaagc 2560
Query: 387 atttatgagtttttgggaagtaacaaagaagtcatgtctgaattgg 432
| ||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 2561 a-ttatgagtttttggggagtaac-aagaagt-atgtctgaattgg 2603
>3x_Contig505
Length = 2614
Score = 262 bits (132), Expect = 1e-69
Identities = 165/173 (95%), Gaps = 3/173 (1%)
Strand = Plus / Minus
Query: 770 ttaacaacgcagccagattggatgtcagatcagcggataagattcatgattgatttactt 829
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 ttaacaacgcacccagattggatgtcagatcagcggataagattcatgattgatttactt 2555
Query: 830 caagtcgctgtttcggtcatagaagaagctacactgcctaaaga-gcgtctttcacncat 888
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 2554 caagtcgctgtttcggtcatagaagaagctacactgcctaaagacgcgtctttc-cccat 2496
Query: 889 g-aaactanaagnattttcagtgttattgttactttagcagctttaaaaggat 940
| |||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 gaaaactaaaagtaatttcagtgttattgttactttagcagctttaaaaggat 2443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7136
Number of Sequences: 1807
Number of extensions: 7136
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)