BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1398 0.0
>3x_Contig1345
Length = 7291
Score = 1398 bits (705), Expect = 0.0
Identities = 860/893 (96%), Gaps = 14/893 (1%)
Strand = Plus / Plus
Query: 48 agcaattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttccc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 agcaattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttccc 2335
Query: 108 ctcaagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaacta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2336 ctcaagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaacta 2395
Query: 168 aagataaagatggtaacgaagttactaaatcaatgaataaaaagttaaaaaaacaatggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2396 aagataaagatggtaacgaagttactaaatcaatgaataaaaagttaaaaaaacaatggt 2455
Query: 228 tggctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgctttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2456 tggctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgctttt 2515
Query: 288 actaattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2516 actaattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgt 2575
Query: 348 attgagtttatgcaaatg-aagatcttaaatttttttctttttgttaacgaattcttaag 406
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 attgagtttatgcaaatgcaagatcttaaatttttttctttttgttaacgaattcttaag 2635
Query: 407 tatcttacaattagcatattttatttctttattgggatgattgactactatatattataa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2636 tatcttacaattagcatattttatttctttattgggatgattgactactatatattataa 2695
Query: 467 gctataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 gctataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgta 2755
Query: 527 ctaagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaatt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2756 ctaagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaatt 2815
Query: 587 gatcctttcttttgctcgtgttcagtggaaatgctttcagaggtttagcggagtgtgatg 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2816 gatcctttcttttgctcgtgttcagtggaaatgctttcagaggtttagcggagtgtgagg 2875
Query: 647 acgaaatggcactagctgaaaacgaagcccgag-tgtataaga-taaacttatggcttct 704
|||||||||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||
Sbjct: 2876 acgaaatggcactagctgaaaacg-aggccgagttgtataagattaaacttatggctcct 2934
Query: 705 gtttttgat-aaagagataa-tttatcgaaaagattccg-tcttttgg-atatcgctttt 760
||||||||| |||||||||| || ||||| ||||||||| |||||||| ||||||||||
Sbjct: 2935 gtttttgataaaagagataagttaatcgagaagattccgttcttttggaatatcgcttta 2994
Query: 761 actcaacattcaga-ttttcaaattaccttagagcatcagattttaa-tacattgaagct 818
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 2995 actcaacattcagatttttcaaattacgttagagcatcagattttaagtacattgaagct 3054
Query: 819 ttaagaaaaatag-tggcaagccattggcacttggaaatgtaggatgcacccgcgaggga 877
||| ||||||| || ||||||||||||||||| | ||| | ||||| ||||||||||
Sbjct: 3055 ataaagaaaatagttgtcaagccattggcacttgaagatgaggaatgca-ccgcgaggga 3113
Query: 878 ttttcaaatcccttattgaattcaatgagataaagggaaacttggaaggctca 930
|||||||||| | ||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 3114 ttttcaaatcac-tatcgaattcaatgagataaagggagactt-gaaggctca 3164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9376
Number of Sequences: 1807
Number of extensions: 9376
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)