BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE06FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1620 0.0
>3x_Contig1699
Length = 18038
Score = 1620 bits (817), Expect = 0.0
Identities = 841/848 (99%), Gaps = 1/848 (0%)
Strand = Plus / Plus
Query: 88 ccatattggctgcgttcaactcatccatatcagcttcttcatcatcagaaaacaatggac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7636 ccatattggctgcgttcaactcatccatatcagcttcttcatcatcagaaaacaatggac 7695
Query: 148 gttcctcgacttcatcatcttcatcattttcgtattcttgttccaagtcaaattcatcct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7696 gttcctcgacttcatcatcttcatcattttcgtattcttgttccaagtcaaattcatcct 7755
Query: 208 tcaactcctcgtcatcttcttctacatcatcgaacaaagtcttcttggcagctgctagtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 tcaactcctcgtcatcttcttctacatcatcgaacaaagtcttcttggcagctgctagtt 7815
Query: 268 ccttcgaatcaacttctggtaactcttgttccgcttttttcaactctttcaaagctgctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7816 ccttcgaatcaacttctggtaactcttgttccgcttttttcaactctttcaaagctgctg 7875
Query: 328 cttcgtcatcatcctcttggttcttcttggatttcttggatttcttacttctccttgtct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 cttcgtcatcatcctcttggttcttcttggatttcttggatttcttacttctccttgtct 7935
Query: 388 catcagatctatcttcttcactaactctcttggttttttctttcctgtgctgatgtcttt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 catcagatctatcttcttcactaactctcttggttttttctttcctgtgctgatgtcttt 7995
Query: 448 ccttcttggcctgaaattcctccaaagttggtggagcaccttgcttatgctttaaacgtc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 ccttcttggcctgaaattcctccaaagttggtggagcaccttgcttatgctttaaacgtc 8055
Query: 508 tgctacccatcttttctcttcaattatttaagatatggttttgatacacacagacccaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 tgctacccatcttttctcttcaattatttaagatatggttttgatacacacagacccaac 8115
Query: 568 acagcagcttacgagaacaccctggacaaatgttgatatactagtttactataacaccaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8116 acagcagcttacgagaacaccctggacaaatgttgatatactagtttactataacaccaa 8175
Query: 628 ttagatgagatgagatgcgatgcgatgtgatgagatgagctttttcacttttcagttcga 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 ttagatgagatgagatgcgatgcgatgtgatgagatgagctttttcacttttcagttcga 8235
Query: 688 aacagaaaattttattatgggaataaatagtgaaaaagaaatgttgctcgtgtgtaatta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aacagaaaattttattatgggaataaatagtgaaaaagaaatgttgctcgtgtgtaatta 8295
Query: 748 caagatgtaaagtttcaatgaaaaattgagatgagcatcaagatgagatgagatgagtgg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 caagatgtaaagtttcaatgaaaaattgagatgagcatcaagatgagatgagatgagtgg 8355
Query: 808 aaaagtatacgttgtatatccttgaggaagctgtaataaagtgtggtttcccgctgattt 867
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8356 aaaagtatacgttgtatatccttgagaaagctgtaataaagtgtggtttcccgctgattt 8415
Query: 868 cagtacccagtaccgttttgatttaaacacanaaaaaatctaatgacgaaacactccgga 927
||||||| ||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8416 cagtaccaggta-cggtttgatttaaacacaaaaaaaatctaatgacgaaacactccggg 8474
Query: 928 attgatcc 935
||||||||
Sbjct: 8475 attgatcc 8482
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,703
Number of Sequences: 1807
Number of extensions: 11703
Number of successful extensions: 715
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)