BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE06RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1364 0.0
>3x_Contig1779
Length = 24855
Score = 1364 bits (688), Expect = 0.0
Identities = 811/843 (96%), Gaps = 8/843 (0%)
Strand = Plus / Plus
Query: 47 tgcggtgatgaattatccttatcagtgtcaaagttttctgcaaactgtctaggtgcatgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13070 tgcggtgatgaattatccttatcagtgtcaaagttttctgcaaactgtctaggtgcatgt 13129
Query: 107 agtgtcttattgaactacctaaacataatgaataacgaggccaacgttggaaactttgaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13130 agtgtcttattgaactacctaaacataatgaataacgaggccaacgttggaaactttgaa 13189
Query: 167 gttgtggatcactctctttcgcaatttgtaaagttag--atgcttctgcaatcaaagcac 224
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 13190 gttgtggatcactctctttcgcaatttgtaaagttacgtatgcttctgcaatcaaagcac 13249
Query: 225 taaatgtgttccccacaggctcacagggtaatactgctcttttaagcgtcggctctcctc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13250 taaatgtgttccccacaggctcacagggtaatactgctcttttaagcgtcggctctcctc 13309
Query: 285 aaaaatgttcaagtcttttccagttgttgaatagatgtaaaactaattccggcgtaaggt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13310 aaaaatgttcaagtcttttccagttgttgaatagatgtaaaactaattccggcgtaaggt 13369
Query: 345 tgttgaacgagtggctgaagcaacccttgaccgacatcgaccagattaccaaaaggcatg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370 tgttgaacgagtggctgaagcaacccttgaccgacatcgaccagattaccaaaaggcatg 13429
Query: 405 atctagttgaatttttcatggatcagttagaattaagatcttctctacaagaagaatgct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13430 atctagttgaatttttcatggatcagttagaattaagatcttctctacaagaagaatgct 13489
Query: 465 tacctagtgttccagatatccgcagactaacaaagaaacttcaaaaaaatgggaacttag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13490 tacctagtgttccagatatccgcagactaacaaagaaacttcaaaaaaatgggaacttag 13549
Query: 525 aagatgttctcaagatttatcagtttgcacaaatggttccagttatttcagatctgttga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13550 aagatgttctcaagatttatcagtttgcacaaatggttccagttatttcagatctgttga 13609
Query: 585 aacagaagaccgaagaggttganttctaatga-ttaatgatactcgtgaaagatgtttta 643
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct: 13610 aacagaagaccgaagaggttga-ttctaatgatttaatgatactcgtgaaagaggtttta 13668
Query: 644 ctcgatccaatgttagaaaatgcaaattctcttgagatattgaaagagttggtagagacc 703
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 13669 ctcgatccaatgttagaaaatgcaaatcctcttgagaaattgaaagagttggtagagacc 13728
Query: 704 aactgttgatctagaaagctacgaggaaacaaatgaattcatgatcaaagtcg-atttta 762
||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct: 13729 -actgttgatctagaagcttacgaggaaacaaatgaattcatgatcaaagtcgaatttaa 13787
Query: 763 tgaacaattattcatcattagaactcaatttgatgaattaaaagatgctttaaaaac-at 821
||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||
Sbjct: 13788 tgaacaattatctatcattagaactcatcttgatgaattaaaagatgctataagaacaat 13847
Query: 822 tcacttaaaacctgctgaatgatttggccttcgatcccaaaaaaaaattggaacttgaaa 881
|||||| | |||||| ||||||||| ||||||||| |||| |||||| |||| ||||
Sbjct: 13848 acacttagacactgctg-atgatttgggcttcgatccagaaaagaaattgaaactagaaa 13906
Query: 882 acc 884
|||
Sbjct: 13907 acc 13909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8212
Number of Sequences: 1807
Number of extensions: 8212
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)