BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE07RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1370 0.0
>3x_Contig1771
Length = 25932
Score = 1370 bits (691), Expect = 0.0
Identities = 752/769 (97%), Gaps = 4/769 (0%)
Strand = Plus / Plus
Query: 47 tgttggttgatggaaccatactataattctcttgtgtagcactaaaagcacagttttata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 tgttggttgatggaaccatactataattctcttgtgtagcactaaaagcacagttttata 1577
Query: 107 ttggctactggataagttggctaaatttagacagtgcaaccaatttgtttcgaggttgga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 ttggctactggataagttggctaaatttagacagtgcaaccaatttgtttcgaggttgga 1637
Query: 167 tttaaacttagcatcattctcgatggcttgtgggggcacagatacgaatatttccaagtc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 tttaaacttagcatcattctcgatggcttgtgggggcacagatacgaatatttccaagtc 1697
Query: 227 tggtgatccctgaacatcgttgttgcataaagccaaccatttagacatcaaaatttcgtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 tggtgatccctgaacatcgttgttgcataaagccaaccatttagacatcaaaatttcgtc 1757
Query: 287 agatgtttggccatcaagttctggtaacaacgatatcagttctgattgtgtgtagaattg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 agatgtttggccatcaagttctggtaacaacgatatcagttctgattgtgtgtagaattg 1817
Query: 347 aatatcgaaattcttcttataataggcttccacaaatagattaaacacgggattctcgct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1818 aatatcgaaattcttcttataataggcttccacaaatagattaaacacgggattctcgct 1877
Query: 407 ctgaccatctttgaaaccgatatcaccttcaaagttacaatggaaaagagccactagtaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 ctgaccatctttgaaaccgatatcaccttcaaagttacaatggaaaagagccactagtaa 1937
Query: 467 cgatcttaaagtcttatttggaaagaaaggactatttggtttcgaagcccaatatatcga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1938 cgatcttaaagtcttatttggaaagaaaggactatttggtttcgaagcccaatatatcga 1997
Query: 527 ttcatggtgaagcattttcatatatgagtccaaacaatctaaactcaacgagttaacttc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 ttcatggtgaagcattttcatatatgagtccaaacaatctaaactcaacgagttaacttc 2057
Query: 587 atgcaaagatgtaatgatagccaataacttaaccttantatntaaatatagttncttaca 646
||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 2058 atgcaaagatgtaatgatagccaataacttaaccttataatttaaatatattttcttaca 2117
Query: 647 ccattcaaagaaattcttttcattggcattggatgncagatgangcattaattgaccacg 706
|||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||
Sbjct: 2118 ccattcaaagaatttcttttcattggcattggatgcaagatgaggcatcaattgaccacc 2177
Query: 707 ctcaaaaagtttgatgaaaatctgactcaaagc-atggtcatataacgggnatcatcttc 765
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 2178 ctcaaaaagtttgatgaaaatctgactcaaagcaatggtcatataacggtaatcatcttc 2237
Query: 766 c-aattgtgcaacaattcg-tttcctttagaagttcattg-acccatgg 811
| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2238 caaattgtgcaacaattcgttttcctttagaagttcattgtacccatgg 2286
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7015
Number of Sequences: 1807
Number of extensions: 7015
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)