BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE08FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1629 0.0
>3x_Contig1794
Length = 36744
Score = 1629 bits (822), Expect = 0.0
Identities = 844/849 (99%), Gaps = 2/849 (0%)
Strand = Plus / Minus
Query: 89 ctaaactggtgtctgacgatatattcaataatctacatccccaaaaggatgatgagatgc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32556 ctaaactggtgtctgacgatatattcaataatctacatccccaaaaggatgatgagatgc 32497
Query: 149 cattaagaagtacccggaagttgctcgatgcattacgtatgttgatgaaacattggaaca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32496 cattaagaagtacccggaagttgctcgatgcattacgtatgttgatgaaacattggaaca 32437
Query: 209 aaaagttcaaattataactaacttcaccgtacgaattcaatcatttatatatggttcatt 268
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32436 aaaagttcaaattagaactaacttcaccgtacgaattcaatcatttatatatggttcatt 32377
Query: 269 gggattcggtgttgaagcacaagtgtgaaagtgtcacattcaaaacattcaaaaagtttt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32376 gggattcggtgttgaagcacaagtgtgaaagtgtcacattcaaaacattcaaaaagtttt 32317
Query: 329 tcacaaggatgcgtggaccagccaatattagtgtgcagggttttgtcaccatgctgagag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32316 tcacaaggatgcgtggaccagccaatattagtgtgcagggttttgtcaccatgctgagag 32257
Query: 389 gttgtggattgaacgcaagactcattcatagccttcaaccacccgatttcactgatagta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32256 gttgtggattgaacgcaagactcattcatagccttcaaccacccgatttcactgatagta 32197
Query: 449 agatctacaataagcgagttgtttggagcttggaaaatgaatgcctaaagtatccgatat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32196 agatctacaataagcgagttgtttggagcttggaaaatgaatgcctaaagtatccgatat 32137
Query: 509 tttggtgcgaagtatgggataaatttgcgaaacaatggatcactatcgatatcgttggtc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32136 tttggtgcgaagtatgggataaatttgcgaaacaatggatcactatcgatatcgttggtc 32077
Query: 569 aagaaataattgaacaagtgcgttataaatcaaaactagaaccaataggtcgtataaatt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32076 aagaaataattgaacaagtgcgttataaatcaaaactagaaccaataggtcgtataaatt 32017
Query: 629 cagccttcaatatgatgcgatatgtcatcgctttcgatagaaaacaaggctgcaaagatg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32016 cagccttcaatatgatgcgatatgtcatcgctttcgatagaaaacaaggctgcaaagatg 31957
Query: 689 tatctcggagatacatagcacatttacaaaataaagttcgaaaaaagaggattacaagag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31956 tatctcggagatacatagcacatttacaaaataaagttcgaaaaaagaggattacaagag 31897
Query: 749 aagctaaactgaacgaatggtttaacagcattataaagtttttgaataaacgtaatagga 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31896 aagctaaactgaacgaatggtttaacagcattataaagtttttgaataaacgtaatagga 31837
Query: 809 acaggattgatgattatgaggatgaatattttgatttgcgtaatgaacacgagggaatcc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31836 acaggattgatgattatgaggatgaatattttgatttgcgtaatgaacacgagggaatcc 31777
Query: 869 cagacagcctacagnacattaagaatcatccgttctacgtcttagaagaaaga-ttgaga 927
||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 31776 cagacagcctacaagacattaagaatcatccgttctacgtcttag-agaaagatttgaga 31718
Query: 928 gcaaaccag 936
|||||||||
Sbjct: 31717 gcaaaccag 31709
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6887
Number of Sequences: 1807
Number of extensions: 6887
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)