BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE08RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1033 0.0
3x_Contig1482 168 1e-41
3x_Contig1769 167 5e-41
3x_Contig1658 161 3e-39
3x_Contig340 157 5e-38
>3x_Contig1765
Length = 24733
Score = 1033 bits (521), Expect = 0.0
Identities = 658/695 (94%), Gaps = 7/695 (1%)
Strand = Plus / Minus
Query: 44 attagtttttttttt-aatatgaggaagaaacattccttcacatcgagcagcaatggaag 102
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17190 attagttttttttttcaatatgaggaagaaacattccttcacatcgagcagcaatggaag 17131
Query: 103 ggatagataactattgtttcagcccgttt-acaacctctcctttcctgcgatttaccgcg 161
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 17130 ggatagataactattgtttcagcccgtttcacaacctctcctttcctgcgatttaccgcg 17071
Query: 162 ttattggaagatatgtttggaagttccccagagtgatttacttactaatatgaaccactg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17070 ttattggaagatatgtttggaagttccccagagtgatttacttactaatatgaaccactg 17011
Query: 222 tccaagtacttgtcacacggagcatatatgtagtcgcatgattatcattacgttactgta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17010 tccaagtacttgtcacacggagcatatatgtagtcgcatgattatcattacgttactgta 16951
Query: 282 ccccaaacttagtacaacagacatcaacaaatactaggcatcggtggtttagtggtaaaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16950 ccccaaacttagtacaacagacatcaacaaatactaggcatcggtggtttagtggtaaaa 16891
Query: 342 tccaacgttgccatcgttgggccccgggttcgattcccggccgatgcattctttttcatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16890 tccaacgttgccatcgttgggccccgggttcgattcccggccgatgcattctttttcatt 16831
Query: 402 attcaataatttattgagcactcaatttttttatcaagcgttgctacctatttcataaac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16830 attcaataatttattgagcactcaatttttttatcaagcgttgctacctatttcataaac 16771
Query: 462 tgaatccactatagcatttcgattcattc-atgcanattcaatagtatcggttaggtttc 520
||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct: 16770 tgaatccactatagcatttcgattcattcaatgcaaattcaatagtatcggtaaggtttc 16711
Query: 521 actaaacgctctcgatgggtttcttacttcgtttcttttattggacanaaaaaccatctt 580
||||| |||||||||| |||||||||| |||||||||||| ||| |||| |||||||
Sbjct: 16710 actaacggctctcgatgtgtttcttactcgttttcttttattgtacagaaaacccatctt 16651
Query: 581 ttc-atttttaacctgaatccaacatttgaaaatgcgaagtgccaattccattgaaataa 639
| | ||| | | | |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 16650 tacaattctcagcatgaatccaacatttgaaaatcgaaagtgccaattcaattgaaataa 16591
Query: 640 gttaaaaggatgatgagaagtttccagtttatttttgcgaaaaat-gttgattgatttca 698
||||||| |||||||||||||| | ||| || ||||||||| ||| || ||| ||| |||
Sbjct: 16590 gttaaaatgatgatgagaagttacaagtata-ttttgcgaagaatagtagatagatatca 16532
Query: 699 ttgaacagggtagttcaattaccttgcctttgata 733
||||||| |||||||||| || |||||||||||||
Sbjct: 16531 ttgaacaaggtagttcaa-taacttgcctttgata 16498
>3x_Contig1482
Length = 10060
Score = 168 bits (85), Expect = 1e-41
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 297 aacagacatcaacaaatactaggcatcggtggtttagtggtaaaatccaacgttgccatc 356
|||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7742 aacacacatcaataactactaagcatcggtggtttagtggtaaaatccaacgttgccatc 7801
Query: 357 gttgggccccgggttcgattcccggccgatgcattcttttt 397
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7802 gttgggccccgggttcgattcccggccgatgcattcttttt 7842
>3x_Contig1769
Length = 25795
Score = 167 bits (84), Expect = 5e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 302 acatcaacaaatactaggcatcggtggtttagtggtaaaatccaacgttgccatcgttgg 361
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8285 acatcaaaaactactaagcatcggtggtttagtggtaaaatccaacgttgccatcgttgg 8344
Query: 362 gccccgggttcgattcccggccgatgcattcttttt 397
||||||||||||||||||||||||||||||||||||
Sbjct: 8345 gccccgggttcgattcccggccgatgcattcttttt 8380
>3x_Contig1658
Length = 13395
Score = 161 bits (81), Expect = 3e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 313 tactaggcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttc 372
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 tactaagcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttc 4228
Query: 373 gattcccggccgatgcattcttttt 397
|||||||||||||||||||||||||
Sbjct: 4229 gattcccggccgatgcattcttttt 4253
>3x_Contig340
Length = 1690
Score = 157 bits (79), Expect = 5e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 319 gcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttcgattcc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcatcggtggtttagtggtaaaatccaacgttgccatcgttgggccccgggttcgattcc 306
Query: 379 cggccgatgcattcttttt 397
|||||||||||||||||||
Sbjct: 307 cggccgatgcattcttttt 325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8835
Number of Sequences: 1807
Number of extensions: 8835
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 5
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)