BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE09FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 1534 0.0
>3x_Contig1024
Length = 3867
Score = 1534 bits (774), Expect = 0.0
Identities = 832/846 (98%), Gaps = 4/846 (0%)
Strand = Plus / Plus
Query: 86 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 2485
Query: 146 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 2545
Query: 206 acaaaaatttttttcgctgtgctgttggacttaaataattttgtatacccgtccttcaag 265
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 acaaaaaagctttccgctgtgctgttggacttaaataattttgtatacccgtccttcaag 2605
Query: 266 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 2665
Query: 326 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 2725
Query: 386 tctaaaactttgacaagttgcctaattttgttgaataataacactgactcctgttcgagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 tctaaaactttgacaagttgcctaattttgttgaataataacactgactcctgttcgagc 2785
Query: 446 tggttcagtaaatcaccattattagaaggagtagattggagagaatgaacgttagcctta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 tggttcagtaaatcaccattattagaaggagtagattggagagaatgaacgttagcctta 2845
Query: 506 ttaccatcgctatcctcttcacttttcagtaagctgaggagctcttcaccaaaaacttcg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 ttaccatcgctatcctcttcacttttcagtaagctgaggagctcttcaccaaaaacttcg 2905
Query: 566 gtgttattttcgctcattttttcgaattctagcccgccgatactaaattcacttttttcg 625
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 gtgttattgtcgctcattttttcgaattctagcccgccgatactaaattcacttttttcg 2965
Query: 626 gttggtttatcttgaacaattttgaacatgtgttccatactgacacttcttacagttttc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 gttggtttatcttgaacaattttgaacatgtgttccatactgacacttcttacagttttc 3025
Query: 686 gaagatttactttcctctgatgttgcaaatatattgattagttctgtttctctcaaatat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 gaagatttactttcctctgatgttgcaaatatattgattagttctgtttctctcaaatat 3085
Query: 746 ttatcaattaagaaaggattagctggcaagttcttcagaatatcttgacttaattcaagt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 ttatcaattaagaaaggattagctggcaagttcttcagaatatcttgacttaattcaagt 3145
Query: 806 tttggcctagtcagactgctactcattttc-attttttatgagcaaagtcgagc-tcttt 863
||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||
Sbjct: 3146 tttggcctagtcagactgctactcaatttcaattttttaggagcaaagtcgagcttcttt 3205
Query: 864 ttcgtaattttgtccaaat-atctaataa-tgtcccctgtggtcatctatgaatgaattc 921
| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct: 3206 tcggtaattttgtccaaataatctaataattgtcccttgtggtcatctatgaatgaattc 3265
Query: 922 attctt 927
||||||
Sbjct: 3266 attctt 3271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8348
Number of Sequences: 1807
Number of extensions: 8348
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)