BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZE09RM1.SCF screened BAC_end
         (940 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1647                                                        1509   0.0  

>3x_Contig1647 
          Length = 14353

 Score = 1509 bits (761), Expect = 0.0
 Identities = 801/811 (98%), Gaps = 3/811 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgatagaaacaatgcagtactcggaatacgctacaaagccagtaatatatcggaaaaaaa 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5954 tgatagaaacaatgcagtactcggaatacgctacaaagccagtaatatatcggaaaaaaa 6013

                                                                        
Query: 108  gaattatccgcaatagccataataaccccaaaggaaaatgaatcaaccattgatcactag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6014 gaattatccgcaatagccataataaccccaaaggaaaatgaatcaaccattgatcactag 6073

                                                                        
Query: 168  cacaatgggcgttggtatttgcatactgagcaccaggcaccggagatcgggtgttaagct 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 cacaatgggcgttggtatttgcatactgagcaccaggcaccggagatcgggtgttaagct 6133

                                                                        
Query: 228  aacgttggccaccgggcatccgatcccaatctgtattatggtgatatgcatgcaatgcga 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6134 aacgttggccaccgggcatccgatcccaatctgtattatggtgatatgcatgcaatgcga 6193

                                                                        
Query: 288  acccaaatcgagcaaaaaaagaaaaaaaaattgagaggacctgcatgaaaagaaataaaa 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6194 acccaaatcgagcaaaaaaagaaaaaaaaattgagaggacctgcatgaaaagaaataaaa 6253

                                                                        
Query: 348  aattccgcgacacacagaaaagtgaaacaaaaagtaactcactctacgagccagcaatat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6254 aattccgcgacacacagaaaagtgaaacaaaaagtaactcactctacgagccagcaatat 6313

                                                                        
Query: 408  gtgttcctgttccaaaaactcaacttttagagtaggaattcagtttctttctctatctag 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 gtgttcctgttccaaaaactcaacttttagagtaggaattcagtttctttctctatctag 6373

                                                                        
Query: 468  tgcgttagagcagctcatagatcaacgagagaaatcagttcagattttgttagagagaag 527
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 tgcgttagagcagctcagagatcaacgagagaaatcagttcagattttgttagagagaag 6433

                                                                        
Query: 528  tacggagaaatgtcccttttctttttttatctctatcttggtgtacttcctatgtgcttg 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6434 tacggagaaatgtcccttttctttttttatctctatcttggtgtacttcctatgtgcttg 6493

                                                                        
Query: 588  gttggtatacgggacgtattgccatttcccagagtatagaccgttcaaaccatccatggc 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6494 gttggtatacgggacgtattgccatttcccagagtatagaccgttcaaaccatccatggc 6553

                                                                        
Query: 648  tacccccccattatggcaanccttcgacgtatcggtagatctacagagttatccctgaac 707
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6554 tacccccccattatggcaa-ccttcgacgtatcggtagatctacagagttatccctgaac 6612

                                                                        
Query: 708  atacatttaagtatatatacatacatgtattatgccattactgatgctgaacactggaaa 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6613 atacatttaagtatatatacatacatgtattatgccattactgatgctgaacactgg-aa 6671

                                                                        
Query: 768  aaaccacagc-acataaatncgnacaataaaatcttacttgtgagtttgcataaattaag 826
            |||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 6672 aaacaacagcaacataaatccgcacaataaaatcttacttgtgagtttgcataaattaag 6731

                                           
Query: 827  ctatttacgtttttgaaatcaccgctacggt 857
            ||||||||  |||||| ||||||||||||||
Sbjct: 6732 ctatttaccgttttgagatcaccgctacggt 6762


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9110
Number of Sequences: 1807
Number of extensions: 9110
Number of successful extensions: 132
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)