BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZE10FM1.SCF screened BAC_end
         (880 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1522                                                        1415   0.0  

>3x_Contig1522 
          Length = 7810

 Score = 1415 bits (714), Expect = 0.0
 Identities = 735/741 (99%), Gaps = 1/741 (0%)
 Strand = Plus / Plus

                                                                        
Query: 85   ttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaaaaccat 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  ttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaaaaccat 909

                                                                        
Query: 145  gaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccgggggaaca 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccgggggaaca 969

                                                                        
Query: 205  ttgagaatgaatttgacaacaaggtcttcgactgcattctccaaagaaacagtctcaaac 264
            |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 970  ttgagaatgaatctgacaacaaagtcttcgactgcattctccaaagaaacagtctcaaac 1029

                                                                        
Query: 265  ggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtacagtgtt 324
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1030 ggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtacagagtt 1089

                                                                        
Query: 325  atcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattctatcaaag 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 atcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattctatcaaag 1149

                                                                        
Query: 385  gtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgcgtaatg 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 gtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgcgtaatg 1209

                                                                        
Query: 445  cagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccatttcaatac 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 cagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccatttcaatac 1269

                                                                        
Query: 505  gcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaacaaaac 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 gcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaacaaaac 1329

                                                                        
Query: 565  tttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaacaaaaa 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 tttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaacaaaaa 1389

                                                                        
Query: 625  ggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacacacttag 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacacacttag 1449

                                                                        
Query: 685  cattagacggcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagccaaaaa 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 cattagacggcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagccaaaaa 1509

                                                                        
Query: 745  cacgggcggaaaagtatcaattgncaacaagcttacgttactcaagctgaaacaat-tga 803
            ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct: 1510 cacgggcggaaaagtatcaattggcaacaagctgacgttactcaagctgaaacaatctga 1569

                                 
Query: 804  atatacatttttttttctgct 824
            |||||||||||||||||||||
Sbjct: 1570 atatacatttttttttctgct 1590


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7619
Number of Sequences: 1807
Number of extensions: 7619
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)