BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC10ZE10FM1.SCF screened BAC_end (880 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1522 1415 0.0 >3x_Contig1522 Length = 7810 Score = 1415 bits (714), Expect = 0.0 Identities = 735/741 (99%), Gaps = 1/741 (0%) Strand = Plus / Plus Query: 85 ttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaaaaccat 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 ttaatgcttaaattgggcaaatatgggttcattagtttaacgaaatcagtgtaaaaccat 909 Query: 145 gaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccgggggaaca 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 gaggcttcttcaaaatggaatagaacccgctcaactgttgataaatcttccgggggaaca 969 Query: 205 ttgagaatgaatttgacaacaaggtcttcgactgcattctccaaagaaacagtctcaaac 264 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 970 ttgagaatgaatctgacaacaaagtcttcgactgcattctccaaagaaacagtctcaaac 1029 Query: 265 ggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtacagtgtt 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1030 ggacgtaacaacggtaatgacatatttcagtctaatttaaatggttaatggtacagagtt 1089 Query: 325 atcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattctatcaaag 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1090 atcttggagaactttaacgagaaggaatgagatagtgtctttaaagtaattctatcaaag 1149 Query: 385 gtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgcgtaatg 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1150 gtattcttgttactttcctttttttattgcaatgagcaaaacctatcgtggtgcgtaatg 1209 Query: 445 cagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccatttcaatac 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1210 cagtagtcacgtctataatgagctttttggtgggtgtttctgttccttccatttcaatac 1269 Query: 505 gcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaacaaaac 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1270 gcacacatttctaatactaaagtatattttttctttgatagtttttagtttcaacaaaac 1329 Query: 565 tttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaacaaaaa 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1330 tttgtttagttttccaagaaaaccttgttttcctgtacatcgatgtgagggtaacaaaaa 1389 Query: 625 ggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacacacttag 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1390 ggagagtccaacgtcaaaatcaacgtacatgctaacattcaacatgctgaacacacttag 1449 Query: 685 cattagacggcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagccaaaaa 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1450 cattagacggcgatgcagagccgcgttgtttgtagtagcgcacaacagtagagccaaaaa 1509 Query: 745 cacgggcggaaaagtatcaattgncaacaagcttacgttactcaagctgaaacaat-tga 803 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct: 1510 cacgggcggaaaagtatcaattggcaacaagctgacgttactcaagctgaaacaatctga 1569 Query: 804 atatacatttttttttctgct 824 ||||||||||||||||||||| Sbjct: 1570 atatacatttttttttctgct 1590 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7619 Number of Sequences: 1807 Number of extensions: 7619 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 880 length of database: 10,358,551 effective HSP length: 16 effective length of query: 864 effective length of database: 10,329,639 effective search space: 8924808096 effective search space used: 8924808096 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)