BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 892 0.0
>3x_Contig1377
Length = 8397
Score = 892 bits (450), Expect = 0.0
Identities = 622/659 (94%), Gaps = 16/659 (2%)
Strand = Plus / Minus
Query: 49 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgtgatttgcttggta 108
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1171 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgttatttgcttggta 1112
Query: 109 acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 1052
Query: 169 acttataaacaaagttagggaaaaatcgagactacgcggactctgaacagcggaggagtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 acttataaacaaagttagggaaaaatcgagactacgcggactctgaacagcggaggagtt 992
Query: 229 ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 932
Query: 289 gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 872
Query: 349 ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 812
Query: 409 ncgaatgccatgaancataaagaggaggagcaagaacgt-actggcag-ttcaacagaaa 466
||||||||||||| |||||||||||||||||| |||| |||| || |||||||||||
Sbjct: 811 ccgaatgccatgaacaataaagaggaggagcaag-acgtaactgcaagtttcaacagaaa 753
Query: 467 tgaaccagatatagcatcctnctcgagtgttggatattcggggtatgg-gaatattttca 525
|||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct: 752 tgaaccagatatagcatcctcctcgagtgttggatattcagggtatggagaatattttca 693
Query: 526 taataagaaacttc-acagttgg-aagtgatgttcaatt-agacag-aatttc-aaaaga 580
||||||| |||||| |||||||| ||||||||||||||| |||||| ||| || ||||||
Sbjct: 692 taataaggaacttcaacagttggaaagtgatgttcaattcagacagaaatatcaaaaaga 633
Query: 581 ac-tcgaggttcaaatcct-cacttttt-aagggtggactatttttg-gaatggac-tac 635
|| ||||| |||||||||| |||||||| ||||||| ||||| | || |||||||| |||
Sbjct: 632 acatcgagtttcaaatcctacactttttcaagggtgtactatctatgtgaatggacgtac 573
Query: 636 aaatcc-actcgatttaaact-cataaacaaatttttttacttggggggacttttaagc 692
||||| ||||||||| |||| ||||||| |||| |||||| ||| |||||||| ||||
Sbjct: 572 gaatccaactcgatttcaactccataaactaattattttacatggtgggactttcaagc 514
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6761
Number of Sequences: 1807
Number of extensions: 6761
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)