BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE11FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1338 0.0
>3x_Contig1696
Length = 16725
Score = 1338 bits (675), Expect = 0.0
Identities = 710/718 (98%), Gaps = 3/718 (0%)
Strand = Plus / Plus
Query: 224 ctaattgagtttgttgactagacgcagcagtaccacacactcctttaccaaattgaatca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 ctaattgagtttgttgactagacgcagcagtaccacacactcctttaccaaattgaatca 81
Query: 284 actgacaagcaactttgccttgaaatggcccaagaatcaactctt-ttttattctctctc 342
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 82 actgacaagcaactttgccttgaaatggcccaagaatcaactcttattttattctctctc 141
Query: 343 cgagtgaggtagaacccagcccagttaacgtcaacattaagtgatatgtaacaatgccag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cgagtgaggtagaacccagcccagttaacgtcaacattaagtgatatgtaacaatgccag 201
Query: 403 attaatgatgcggcgttcgccagattgcagacccagttgtcttgaccttctgctaaagcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attaatgatgcggcgttcgccagattgcagacccagttgtcttgaccttctgctaaagcc 261
Query: 463 tcatatgaaatcaagagttgctcgagagcttttttcctgtctgttgtttggaatgaagag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcatatgaaatcaagagttgctcgagagcttttttcctgtctgttgtttggaatgaagag 321
Query: 523 tagtctgcgtgatgtttaccgtcttctcccatattaaatagaggtcgatattttgtagcc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagtctgcgtgatgtttaccgtcttctcccatattaaatagaggtcgatattttgtagcc 381
Query: 583 agccttttagttaagagacgcagcgtagactctaaagcaaagtttagttaacaatattta 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agccttttagttaagagacgcagcgtagactctaaagcaaagtttagttaacaatattta 441
Query: 643 cttgtattttcaacataaatttctcctgtgtaaaatcaaggttcaaaatctgatttacaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttgtattttcaacataaatttctcctgtgtaaaatcaaggttcaaaatctgatttacaa 501
Query: 703 caagtactgtttaaagaactctaatagtcagatccgaaaatgttaaattcttttcaaatc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caagtactgtttaaagaactctaatagtcagatccgaaaatgttaaattcttttcaaatc 561
Query: 763 caccgaagaaag-aaaggcgcattactttactatttgnaggagctgttctcgtcacacag 821
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 caccgaagaaagaaaaggcgcattactttactatttgagggagctgttctcgtcacacag 621
Query: 822 tgaccaatgtctgctctcactacgctttgactcagaccgtggttccctgcatttgttgag 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgaccaatgtctgctctcactacgctttgactcagaccgtggttccctgcatttgttgag 681
Query: 882 tcagtcatcttaaaccaaaacctaaaaaatgaaacggaccaggaattgaacctgcaac 939
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 682 tcagtcatcttaaacaaaaactaaaaaaatgaaacgga-caggaattgaacctgcaac 738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6277
Number of Sequences: 1807
Number of extensions: 6277
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)