BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE11RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1328 0.0
>3x_Contig1216
Length = 5132
Score = 1328 bits (670), Expect = 0.0
Identities = 743/760 (97%), Gaps = 6/760 (0%)
Strand = Plus / Minus
Query: 48 cagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 cagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccattatgtcgt 2066
Query: 108 agcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 agcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaaccttaaa 2006
Query: 168 ttatgaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 ttatgaaaatgacattatgattcataacttcaaatactcacttatcttgcacaacaacga 1946
Query: 228 agataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 agataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactattaggcatc 1886
Query: 288 cacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 cacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaaccgggc 1826
Query: 348 tgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgttcgacat 1766
Query: 408 ggatggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttgga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ggatggcttgttaataaacaccgaagacatgtacactgttgctataaataaggtcttgga 1706
Query: 468 ggcacatgacaaaggtactatgtcttgngatctgaagttgcagttgcaaggtttgcctgg 527
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1705 ggcacatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggtttgcctgg 1646
Query: 528 tccagaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 tccagaagctggccgtaaggttattgaatattatgatttacctttgtcattcgaagaatt 1586
Query: 588 tgatacgttgaataggatacatcangcaatcctgttgcccacgagcatatttctccctgg 647
||||||||||||||||| |||||| |||||||||| ||| ||||||| ||||||||||||
Sbjct: 1585 tgatacgttgaataggaaacatcaggcaatcctgtggccaacgagcaaatttctccctgg 1526
Query: 648 aacattagagcttattgcttactttaaaggaaaggaaacgttccaatggcgctctgcacc 707
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 1525 aacattagagcttattgcttac-ttaaaggaaagg-aacgttccaattgcgctctgcacc 1468
Query: 708 tctttcactgtagaaaaagttccatcattaaaacttccaaccttactgaagctttcaaag 767
|||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1467 tcttccactgtag-aaaagttccatca-taaaacttcccaccttactgaagctttcaaag 1410
Query: 768 cattcgacgttattatttactgttgacgattcccagaatt 807
|||||||||||| || |||||| |||||| ||||||||||
Sbjct: 1409 cattcgacgtta-taattactggtgacga-tcccagaatt 1372
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6508
Number of Sequences: 1807
Number of extensions: 6508
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)