BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE12FM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 581 e-166
>3x_Contig1016
Length = 4444
Score = 581 bits (293), Expect = e-166
Identities = 329/337 (97%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 86 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 2701
Query: 146 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 2761
Query: 206 ctgcaatatcgtg-cattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 264
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 2821
Query: 265 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 2881
Query: 325 taaacgtaaactatctcattgccttggtggctttaaggt-aaggaactacacttactata 383
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2882 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 2941
Query: 384 gatgttgataaaaaagactgggaaacattaaatttca 420
|||||||||||||| |||||||| || |||||||||
Sbjct: 2942 gatgttgataaaaagcactgggaagca-taaatttca 2977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,343
Number of Sequences: 1807
Number of extensions: 41343
Number of successful extensions: 5730
Number of sequences better than 1.0e-20: 1
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)