BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZE12RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1356 0.0
>3x_Contig1486
Length = 12131
Score = 1356 bits (684), Expect = 0.0
Identities = 726/736 (98%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 47 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967 tacaatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtat 3026
Query: 107 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3027 taagcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtga 3086
Query: 167 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 acaaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagc 3146
Query: 227 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 tctttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcac 3206
Query: 287 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 tagcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaata 3266
Query: 347 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 ctctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacat 3326
Query: 407 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3327 tggatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaactta 3386
Query: 467 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3387 tagataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaa 3446
Query: 527 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3447 ctgaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttc 3506
Query: 587 caatagaacaggtattacaagtgactccattgatatacaccgtgtttccaagtc-tgcat 645
||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 3507 caatagaacaggtattacaagtgactccattgataaacaccgtg-ttccaagtcttgcat 3565
Query: 646 acttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgttgta 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3566 acttcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgtta 3625
Query: 706 tttagagaaacgagagacgcagccaacgat-ccattatacatgcgctgtacgagcaactt 764
|| ||||||||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct: 3626 ttaagagaaacgagagacgcagccaacgatacaatcatacatgcgctttacgagcaactt 3685
Query: 765 ttagctttgcaacaaa 780
||||||||||||||||
Sbjct: 3686 ttagctttgcaacaaa 3701
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6996
Number of Sequences: 1807
Number of extensions: 6996
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)