BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZF01RM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1641                                                        1241   0.0  

>3x_Contig1641 
          Length = 13261

 Score = 1241 bits (626), Expect = 0.0
 Identities = 756/790 (95%), Gaps = 8/790 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   tatgtaattgagac-acaaccgagagaacgaagtcacgtgatggacatctggtgattcca 105
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6705 tatgtaattgagactacaaccgagagaacgaagtcacgtgatggacatctggtgattcca 6764

                                                                        
Query: 106  acgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatcccaattt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6765 acgctagatacagcacactgtgtcctaatattgccaaagatcagctagaaatcccaattt 6824

                                                                        
Query: 166  caagctgtttagcagtccacagatagtatggattggataagtccccccaaatccagatga 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6825 caagctgtttagcagtccacagatagtatggattggataagtccccccaaatccagatga 6884

                                                                        
Query: 226  aagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttggtgaa 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6885 aagccgtagggtccctgctatatcacttctttccattgctcagatgttgaatttggtgaa 6944

                                                                        
Query: 286  acctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaaggaaga 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6945 acctttgtcacaagttttcggcaattttgttgttttgaaacgaaaatattaaaaggaaga 7004

                                                                        
Query: 346  gttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttggaagaa 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7005 gttgtttatttcgccacctcaaagatatcagcggatcaagatagcaattggttggaagaa 7064

                                                                        
Query: 406  ggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttcaata 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 ggtggtacaataagctgctgtactgtttaattgaagtttgtttctccaagaatttcaata 7124

                                                                        
Query: 466  cagtcgacacatcctttttattggttgaaaggacggacgaagagactaanntacagcctt 525
            |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||
Sbjct: 7125 cagtcgacacatcctttttattggttgaaaggacggacgaagagactaataacaagcctt 7184

                                                                        
Query: 526  tttttaatagaaacaatggggtcaaa-tttgtctaatcctgntattgataaggaacaaca 584
            ||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 7185 tttttaatagaaacaat-gggtcaaattttgtctaatcctgtaattgataaggaacaaca 7243

                                                                        
Query: 585  ttctggtagtgatgttttgactgctnttgggttatgtgctatgcaaagatggcgtatgtc 644
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 7244 ttctggtagtgatgttttgactgcttttgggttatgtgctatgcaaggatggcgtatgtc 7303

                                                                        
Query: 645  tattggagattctcacattggtgattggaacatttctgatgatgagaaggagcatttggc 704
            ||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 7304 tatggaagattctcacattgttgatttgaacatttctgatgatgagaaggagcatttggc 7363

                                                                        
Query: 705  gtactactgtgtgtttgacggaactggttggttcaagcgttgcttaattttgttggat-a 763
            ||||||||||||||||||||||  ||| |||||||||||||||| | || || ||||| |
Sbjct: 7364 gtactactgtgtgtttgacggacatgg-tggttcaagcgttgctcagttctg-tggatca 7421

                                                                        
Query: 764  cagattttccagaattttacaaaaccagggagctttcaagaagaaatcttaccaacaagg 823
            ||| || ||||  ||||||||||| ||||  |||||||||||||| ||||| |||| |||
Sbjct: 7422 cag-ttctccaagattttacaaaaacaggatgctttcaagaagaagtctta-caacgagg 7479

                      
Query: 824  ctcttattca 833
            ||||||||||
Sbjct: 7480 ctcttattca 7489


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8229
Number of Sequences: 1807
Number of extensions: 8229
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)