BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1550 0.0
>3x_Contig1062
Length = 5564
Score = 1550 bits (782), Expect = 0.0
Identities = 836/848 (98%), Gaps = 5/848 (0%)
Strand = Plus / Plus
Query: 86 agacgtagaatcaaccttgaacttggtaccaaagatcttgaccttgtcagtatctagaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 agacgtagaatcaaccttgaacttggtaccaaagatcttgaccttgtcagtatctagaga 4428
Query: 146 agtgttggcaatcaaaattttagcattttccacgcgctttggctggttgctaccaaatct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 agtgttggcaatcaaaattttagcattttccacgcgctttggctggttgctaccaaatct 4488
Query: 206 ttttggtaagataaatccttcatctaagaaagaatcagaaagcttaccaccaatgatctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ttttggtaagataaatccttcatctaagaaagaatcagaaagcttaccaccaatgatctt 4548
Query: 266 gataatttgaatatgttccaaattggtggaacccttcaatctgagaatggcatctgttgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 gataatttgaatatgttccaaattggtggaacccttcaatctgagaatggcatctgttgc 4608
Query: 326 caattttgagaaatgatctttatcttgagacaaaattttagatgaaagtgtcgtgtttgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 caattttgagaaatgatctttatcttgagacaaaattttagatgaaagtgtcgtgtttgc 4668
Query: 386 aatgctgatcaaatcgttgtagaactcttccttattattcgagttatccacagcggcctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 aatgctgatcaaatcgttgtagaactcttccttattattcgagttatccacagcggcctt 4728
Query: 446 ctccaatgctgatagagcagccgcagatgcaattctgaaaccttcaataatggtttgtgg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 ctccaatgctgatagagcagccgcagatgcaattctgaaaccttcaataatggtttgtgg 4788
Query: 506 gtggatttttccttgttcgaccaatttctcagcctctctcaatagctcagcacttaaaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 gtggatttttccttgttcgaccaatttctcagcctctctcaatagctcagcacttaaaac 4848
Query: 566 tgtaacactggtagtaccgtcaccaacttcatcatcttggactttactaatgttcacaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tgtaacactggtagtaccgtcaccaacttcatcatcttggactttactaatgttcacaag 4908
Query: 626 aactttagcggcgggattgtccaatggaatcgatttaagaatagtagcaccatcatttgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 aactttagcggcgggattgtccaatggaatcgatttaagaatagtagcaccatcatttgt 4968
Query: 686 taccatgctagtgttgttagatgcactttgaagtagcttgtccataccttttggtcctag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 taccatgctagtgttgttagatgcactttgaagtagcttgtccataccttttggtcctag 5028
Query: 746 agtagttttcaccanatcacctacagcgatggcaccngacaaagcactcatacgagcatt 805
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5029 agtagttttcaccaaatcacctacagcgatggcaccgacaaaagcactcatacgagcatt 5088
Query: 806 ttcagcccttttctttcgtaacttgatcccc-aaaatcggaacgctcattcttacttgat 864
|||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5089 ttcagccc-tttcttcggtaacttgatccccaaaaatcggaacgctcattcttacttgat 5147
Query: 865 gtttggcggactgttgctaactttgttgg-agtagaggatgatc-aaaagaattggcc-c 921
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct: 5148 gtttggcggactgttgctaactttgttggaagtagaggatgatcaaaaagaattggccac 5207
Query: 922 cgtgatat 929
||||||||
Sbjct: 5208 cgtgatat 5215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6625
Number of Sequences: 1807
Number of extensions: 6625
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)