BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF02RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1172 0.0
>3x_Contig1305
Length = 9229
Score = 1172 bits (591), Expect = 0.0
Identities = 696/726 (95%), Gaps = 4/726 (0%)
Strand = Plus / Plus
Query: 47 atgaacgatgttgcacagtttctaagacaaaatgtcgttcaaggtaagaggactaaggat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 atgaacgatgttgcacagtttctaagacaaaatgtcgttcaaggtaagaggactaaggat 1705
Query: 107 gacaaatatcacttgaacatccataaggacactgaattgggtgacaacgaaactatcaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 gacaaatatcacttgaacatccataaggacactgaattgggtgacaacgaaactatcaag 1765
Query: 167 actactaaaaagacactggcggcccaaggtggcggttgttgtggtggtggtgctggcttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 actactaaaaagacactggcggcccaaggtggcggttgttgtggtggtggtgctggcttg 1825
Query: 227 tacaaataggcagctggaacagaatagcaaattatgaggcagattgatgacctgtctttc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 tacaaataggcagctggaacagaatagcaaattatgaggcagattgatgacctgtctttc 1885
Query: 287 ccctgatttcgtcctttctgaagggactctattactcgactactaactctggtgtctttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 ccctgatttcgtcctttctgaagggactctattactcgactactaactctggtgtctttg 1945
Query: 347 accccagatgcgttttgcagtccctgatatggcgcattctgttacagtattttgcttata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 accccagatgcgttttgcagtccctgatatggcgcattctgttacagtattttgcttata 2005
Query: 407 cacaatcattaatttacatcttctttttcttttccttccccgtcaggtttcgtgaaccaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 cacaatcattaatttacatcttctttttcttttccttccccgtcaggtttcgtgaaccaa 2065
Query: 467 atatgggaactttatcatgtacataacgaattatgtttgtcaacggtctctattattt-a 525
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 2066 atatgggaactttatcatgtacataacgaattatgttggtcaacggtctctattatttaa 2125
Query: 526 tcaaactcta-tttatcatttttactatgcaacttcaaggcgtttacgtacggtgcctac 584
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 tcaaactctattttatcatttttactatgcaacttcaaggcgtttacgtacggtgcctac 2185
Query: 585 agtgcacattgtatttnctaag-ttacatctatatatacgttcgtgtgtgtaatctgact 643
||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 2186 agtgcacattgtaattcctaagtttacatctatatatacgttcgtgtgtgtcatctgact 2245
Query: 644 catattaagttccatccattatttttttcggtggcatatatatttcatttcattaggttt 703
||||||| |||||||||| | |||||||| || ||||||||||||||| |||||| | |
Sbjct: 2246 catattaggttccatccaattattttttcgttgtcatatatatttcattccattagttat 2305
Query: 704 ggatgtaccatagaaaacgaacttgtccaaagctttggggaaaaacagaaagggctaaac 763
| ||| | ||||| |||| || || ||||||| | ||| ||||||||||| ||||| |
Sbjct: 2306 gtatgaccgatagagaacg-acatggtcaaagctattggggaaaacagaaagtgctaagc 2364
Query: 764 tcgatt 769
||||||
Sbjct: 2365 tcgatt 2370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7241
Number of Sequences: 1807
Number of extensions: 7241
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)