BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZF03FM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1034                                                        1550   0.0  

>3x_Contig1034 
          Length = 3729

 Score = 1550 bits (782), Expect = 0.0
 Identities = 845/860 (98%), Gaps = 5/860 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   cggttcttcacgaaagttggaaagataccctactacttcgctcgaatcattagagacaga 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 cggttcttcacgaaagttggaaagataccctactacttcgctcgaatcattagagacaga 2903

                                                                        
Query: 146  actaaagcgcttgaatgagaatttagtggccctaatggatgatattcatcagaacattac 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 actaaagcgcttgaatgagaatttagtggccctaatggatgatattcatcagaacattac 2963

                                                                        
Query: 206  taacgtctccaattttgttattcaagctattgaatttttcaagaagtttttaccagagac 265
            ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 taacgtctccaaagctgttattcaagctattgaatttttcaagaagtttttaccagagac 3023

                                                                        
Query: 266  taataggatcacatatactgttacaatggctaatagtgccgctctacgaagcattgccaa 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 taataggatcacatatactgttacaatggctaatagtgccgctctacgaagcattgccaa 3083

                                                                        
Query: 326  gatcgtgtcacattttgtagataatttattgaacgcgccagctttccaaaattcccgatc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 gatcgtgtcacattttgtagataatttattgaacgcgccagctttccaaaattcccgatc 3143

                                                                        
Query: 386  aatattattgaaggcatacctagcattcttgcaaaaattgaatataaatgtctttgaaga 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 aatattattgaaggcatacctagcattcttgcaaaaattgaatataaatgtctttgaaga 3203

                                                                        
Query: 446  ttcgatggataatttacacgcattgccaacaatgagaaatttcgccattgacgataaatg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 ttcgatggataatttacacgcattgccaacaatgagaaatttcgccattgacgataaatg 3263

                                                                        
Query: 506  tgggttgccaaacatggataaactttctactatagtggatgagatagtacgatgtgagcc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 tgggttgccaaacatggataaactttctactatagtggatgagatagtacgatgtgagcc 3323

                                                                        
Query: 566  atcgggaatttcagatcaagatggggcattcatcgctccagttttaaggggcttaagccg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 atcgggaatttcagatcaagatggggcattcatcgctccagttttaaggggcttaagccg 3383

                                                                        
Query: 626  aagatcagcaatactaacagtaatgtttggtctaccaaatccacaacaagaacatcatga 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 aagatcagcaatactaacagtaatgtttggtctaccaaatccacaacaagaacatcatga 3443

                                                                        
Query: 686  tatggttaaagcactgttttccactttccccgatcttcatttcttctgtgttaaggacta 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 tatggttaaagcactgttttccactttccccgatcttcatttcttctgtgttaaggacta 3503

                                                                        
Query: 746  catcaaaccatgtgctgaaacgataccaaaacctccgacccacatttcgaaaccaatgga 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 catcaaaccatgtgctgaaacgataccaaaacctccgacccacatttcgaaaccaatgga 3563

                                                                        
Query: 806  aacggncaagatacccagttttgttcctccgttcagaagtg-ccattgatgcttt-agtc 863
            ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||
Sbjct: 3564 aacggccaagatacccagttttgttcctccgttcag-agtgcccattgatgctttaagtc 3622

                                                                        
Query: 864  cgncgatatcgatttcaaattctactggaaaaacac-aaagatgac-ggggacgcttggt 921
            || ||||||||||||||| |||||||| | |||||| ||||||||| ||  |||||||||
Sbjct: 3623 cgccgatatcgatttcaatttctactgaagaaacacaaaagatgacaggcaacgcttggt 3682

                                
Query: 922  ggatatctgtatcccaaaat 941
            ||||||||||||||||||||
Sbjct: 3683 ggatatctgtatcccaaaat 3702


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6668
Number of Sequences: 1807
Number of extensions: 6668
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)