BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1148 0.0
>3x_Contig1384
Length = 9372
Score = 1148 bits (579), Expect = 0.0
Identities = 691/715 (96%), Gaps = 12/715 (1%)
Strand = Plus / Plus
Query: 47 agtgctaatatttgatggtactttacgggacgctgataaaatccaaccttcgcttcatta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 agtgctaatatttgatggtactttacgggacgctgataaaatccaaccttcgcttcatta 2477
Query: 107 cgccaccaaacagaagcaatcgttattgttgattgttaatggagatgttactggagatgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2478 cgccaccaaacagaagcaatcgttattgttgattgttaatggagatgttactggagatgc 2537
Query: 167 actcgctgctatcaccatcaataacaataagaataaccgcaatggtaatccatctaagac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2538 actcgctgctatcaccatcaataacaataagaataaccgcaatggtaatccatctaagac 2597
Query: 227 gattatattgaagtatttcgacaaagatcatgataacatttcattacaagaaaactacga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2598 gattatattgaagtatttcgacaaagatcatgataacatttcattacaagaaaactacga 2657
Query: 287 tcttgtcaaattctgtcagctacctcaaggattaggctccatatattcgccgaaattcag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2658 tcttgtcaaattctgtcagctacctcaaggattaggctccatatattcgccgaaattcag 2717
Query: 347 tgaatacgttccaagttccgcatctgcgaatctattttttggttccatggaggccatcaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 tgaatacgttccaagttccgcatctgcgaatctattttttggttccatggaggccatcaa 2777
Query: 407 ggccaccacaggcgaatgctttctttacaaccctagtgctgctcttgatgacgaaattaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 ggccaccacaggcgaatgctttctttacaaccctagtgctgctcttgatgacgaaattaa 2837
Query: 467 gaacaggtcattacagacaactcttacccttaacgttggtggacagtcggagtttgaaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 gaacaggtcattacagacaactcttacccttaacgttggtggacagtcggagtttgaaat 2897
Query: 527 agatcanagacgtgcatcgctagacaatatcttgaataacacaatgtgtcatgggttagc 586
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 agatcaaagacgtgcatcgctagacaatatcttgaataacacaatgtgtcatgggttagc 2957
Query: 587 agaatggttttgtttcca-tcacngaataacattgnccaa-gcagctagttatctttcgc 644
|||| ||||||||| ||| |||| ||||| ||||| |||| |||||||||||||||||||
Sbjct: 2958 agaa-ggttttgttcccagtcacggaatagcattggccaaggcagctagttatctttcgc 3016
Query: 645 a--cacccttgaaagacgatt-cttgatggct-agactgtacgtgcccgacctttcgaaa 700
| ||||||||||||||||| |||||||||| |||||||||||||| || | ||||||
Sbjct: 3017 aacaacccttgaaagacgattccttgatggctaagactgtacgtgccgaacttatcgaaa 3076
Query: 701 c-cttacatt-cccatggatc-agcacttcaaaataa-tttggttc-aatagatt 750
| || ||||| || ||||||| ||||||||||||||| |||||||| ||||||||
Sbjct: 3077 cactaacattaccaatggatcaagcacttcaaaataagtttggttcgaatagatt 3131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6286
Number of Sequences: 1807
Number of extensions: 6286
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)