BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF04FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1515 0.0
3x_Contig38 981 0.0
>3x_Contig1517
Length = 8289
Score = 1515 bits (764), Expect = 0.0
Identities = 811/822 (98%), Gaps = 4/822 (0%)
Strand = Plus / Minus
Query: 87 cagtgatagaaat-ataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 145
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 cagtgatagaaatcataaactttttcttataacgttgttgaagtaaaccaagttgctgtg 5293
Query: 146 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5292 aactaaatgtttcagtatgaaaaagacattcgaaacccttaattatgaagaagatcaaat 5233
Query: 206 acatatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5232 acatatctcttagaagaaacaaaagaaaaaaagcatattaaaggcaatattgaaggctcg 5173
Query: 266 atcaagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5172 atcaagagatatctaacaagaaaaagataaccagtacctgtagtatcagcttcatctacg 5113
Query: 326 aaactttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5112 aaactttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccag 5053
Query: 386 aaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5052 aaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtag 4993
Query: 446 cagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 cagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatac 4933
Query: 506 aatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932 aatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataa 4873
Query: 566 ctataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 ctataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaac 4813
Query: 626 cgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 cgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaa 4753
Query: 686 taaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatggatagat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4752 taaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagat 4693
Query: 746 atatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 atatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatga 4633
Query: 806 ctggcgatctgtgttagcaagcttgtgggttaaaatggta-caacagcatagtccaaaat 864
||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 4632 ctggcgatctgtggtagcaagcttgtggg-taaaatggtaccaacagcatagtccaaaat 4574
Query: 865 tgnatg-agtagatatgaatgttgagactgcagcanattcca 905
| ||| |||||||||||||||||||||||||||| ||||||
Sbjct: 4573 tagatgaagtagatatgaatgttgagactgcagcagattcca 4532
>3x_Contig38
Length = 925
Score = 981 bits (495), Expect = 0.0
Identities = 560/580 (96%), Gaps = 13/580 (2%)
Strand = Plus / Minus
Query: 328 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 actttcttaacgggtgaatttacaaacatttctaatgatcttcattttaagcttccagaa 524
Query: 388 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaagtagca 464
Query: 448 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagctatacaa 404
Query: 508 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcgataact 567
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 403 tgtcatcaggcttcaagatgaagaggtcaaggagtcctgacc----------cgataact 354
Query: 568 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggggaaccg 294
Query: 628 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttgtaaata 234
Query: 688 aaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatggatagatat 747
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 233 aaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgataagatat 174
Query: 748 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggtatgact 114
Query: 808 ggcgatctgtgttagcaagcttgtgggttaaaatggta-caacagcatagtccaaaattg 866
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 113 ggcgatctgtggtagcaagcttgtggg-taaaatggtaccaacagcatagtccaaaatta 55
Query: 867 natg-agtagatatgaatgttgagactgcagcanattcca 905
||| |||||||||||||||||||||||||||| ||||||
Sbjct: 54 gatgaagtagatatgaatgttgagactgcagcagattcca 15
Score = 327 bits (165), Expect = 2e-89
Identities = 171/173 (98%)
Strand = Plus / Minus
Query: 111 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 cttataacgttgttgaagtaaaccaagttgctgtgaactaaatgtttcagtatgaaaaag 731
Query: 171 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acattcgaaacccttaattatgaagaagatcaaatacatatctcttagaagaaacaaaag 671
Query: 231 aaaaaaagcatattaaaggcaatattgaaggctcgatcaagagatatctaaca 283
|| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 670 aagaaaagcatattaaaggcaatattgaaggctcgttcaagagatatctaaca 618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7499
Number of Sequences: 1807
Number of extensions: 7499
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)