BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF04RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1324 0.0
>3x_Contig1553
Length = 8593
Score = 1324 bits (668), Expect = 0.0
Identities = 753/772 (97%), Gaps = 7/772 (0%)
Strand = Plus / Minus
Query: 49 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaataggg 5393
Query: 109 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5392 tatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgcacaat 5333
Query: 169 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5332 caataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaaaaaa 5273
Query: 229 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 tgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcagggttct 5213
Query: 289 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5212 ggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccctata 5153
Query: 349 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5152 tagcggaatggtcaaacacactcactaatagtggatttattttactagcattatacctgt 5093
Query: 409 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5092 tgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggttttg 5033
Query: 469 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5032 gattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccagttat 4973
Query: 529 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgcgagg 4913
Query: 589 agattgatgtagctacgtcgaagatcaggtctcccacca-gagaaaacaatggactgtcg 647
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 4912 agattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggactgtcg 4853
Query: 648 ga-taaccatctttatgggtgct-atttacttacgg-tatatacctca-tttcaagaatt 703
|| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 4852 gattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaagaatc 4793
Query: 704 c-acgatccataaggctggttacgctttaatcaacgctatcgtta-ttgggttgccttca 761
| ||||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct: 4792 caacgatccatcaggctggttacgctctaatcaacgctatcgttatttggtttgccttca 4733
Query: 762 aactcaccaaacagttggtaaacgaacccggtggtaaacgtaacttacaaaa 813
||||||||| |||||| |||||||| || | || |||||||||| |||||||
Sbjct: 4732 aactcaccacacagtttgtaaacgatccggttgctaaacgtaacctacaaaa 4681
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5957
Number of Sequences: 1807
Number of extensions: 5957
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)