BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig641 1558 0.0
>3x_Contig641
Length = 2317
Score = 1558 bits (786), Expect = 0.0
Identities = 836/849 (98%), Gaps = 4/849 (0%)
Strand = Plus / Minus
Query: 88 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 1612
Query: 148 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 1552
Query: 208 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 1492
Query: 268 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 1432
Query: 328 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 1372
Query: 388 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 1312
Query: 448 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 1252
Query: 508 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 atgtttcgatggatgctgtcacagcagtcactttaaaattggaattatcttctacatttt 1192
Query: 568 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttcta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 tcaagtcaagtattatatcgatttgatcggaaacagagtacgctggtttggagagttcta 1132
Query: 628 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 aattacaaatgaacttatcattcatttttacaacatactcagtttgtaatgactgcaact 1072
Query: 688 gcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacctgtaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gcgatagtagcgaagaattgctttgcgtctcatcaatagagttctctgggatacctgtaa 1012
Query: 748 aataaaattgcgancagntcattcggactgnnagttga-ggttctgtttcaaattg-tgg 805
||||||||||||| || |||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 1011 aataaaattgcgacaagttcattcggactgag-gttgagggttctgtttcaaattgttgg 953
Query: 806 cctaat-atgaatcaatgggtacgtcngaatcatcattttcatttcattctgaaactacg 864
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 952 cctaataatgaatcaatgggtacgtcggaatcatcattttcattccattctgagactacg 893
Query: 865 tctttaaacttttgtttcatggcttcaatcgaagttcctgaaagtttcccgatacttgac 924
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 892 tctttaaacttttgtttcatggcttcaatcgaagttcctgaaggtttcccgatacttgac 833
Query: 925 acgctcttt 933
|||||||||
Sbjct: 832 acgctcttt 824
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7062
Number of Sequences: 1807
Number of extensions: 7062
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)