BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF06FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig226 1693 0.0
>3x_Contig226
Length = 1863
Score = 1693 bits (854), Expect = 0.0
Identities = 862/865 (99%)
Strand = Plus / Plus
Query: 89 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttgtctatcttgatggacagaaagactaagaagccattgatcatttgctctagtgaag 589
Query: 149 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtggtatgaatatcgaagatgtggcaaagaccaacccagatgctatcaagaagttctacg 649
Query: 209 tcgaagattccgttggattgaccccagaaactgctgctgagattgctgcctccttgggtt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcgaagattccgttggattgaccccagaaactgctgctgagattgctgcctccttgggtt 709
Query: 269 tctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tctccaaggaagccgaagctgatgctaaggatgcagtcttgaagttatataagatcttca 769
Query: 329 aggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggata 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aggaaaaggatgctactcaaatcgaaattaacccattgagtgaagttcttgaccaggata 829
Query: 389 agaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 agaaggtcatgtgtatggatgccaagttcggtttcgatgacaatgcctccttcagacaaa 889
Query: 449 aagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgccaaga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aagacgtgtactcatggagagatttgactcaagaagatccagatgaagttaccgccaaga 949
Query: 509 agagtgacttgaactttgtcaagttaaagggtaatatcggttgtttggtcaacggtgccg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 agagtgacttgaactttgtcaagttaaagggtaatatcggttgtttggtcaacggtgccg 1009
Query: 569 gtttagccatggccaccatggatgtcattaagttatatggtggtgatccagctaacttct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gtttagccatggccaccatggatgtcattaagttatatggtggtgatccagctaacttct 1069
Query: 629 tggattgtggtggtggtgccactccggaaactatcgaaactgctttcaagttgatcttgt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 tggattgtggtggtggtgccactccggaaactatcgaaactgctttcaagttgatcttgt 1129
Query: 689 ccaacgataacgtcgatgccatcttcgttaacattttcggtggtattgtcagatgtgatt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ccaacgataacgtcgatgccatcttcgttaacattttcggtggtattgtcagatgtgatt 1189
Query: 749 tcgtcgctcaaggtctagtcgctgctaccaagaacttgtctgtcaaggtcccaattgttg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tcgtcgctcaaggtctagtcgctgctaccaagaacttgtctgtcaaggtcccaattgttg 1249
Query: 809 ctcgtctacaaggtaccaacttggaacaaggtagacgaattatcgctgaatccggtttga 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 ctcgtctacaaggtaccaacttggaacaaggtagacgaattatcgctgaatccggtttga 1309
Query: 869 agatctattccttcgacgaattgnacccagctgctgaaaaagttgttgagttgactaata 928
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 1310 agatctattccttcgacgaattggacccagctgctgaaaaggttgttgagttgactaata 1369
Query: 929 gcaaataagcgagcgtctgaaaaag 953
|||||||||||||||||||| ||||
Sbjct: 1370 gcaaataagcgagcgtctgacaaag 1394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6190
Number of Sequences: 1807
Number of extensions: 6190
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)