BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZF06RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1801                                                        1425   0.0  

>3x_Contig1801 
          Length = 57606

 Score = 1425 bits (719), Expect = 0.0
 Identities = 763/777 (98%), Gaps = 1/777 (0%)
 Strand = Plus / Minus

                                                                         
Query: 49    aaagaaacgaatcacatagcactgccatacggaatcaatgctgaacattgacaatgtcag 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34527 aaagaaacgaatcacatagcactgccatacggaatcaatgctgaacattgacaatgtcag 34468

                                                                         
Query: 109   aataccccaagcaaaagtgcagaaactcaaccaaatccgaggtttgattctcaatagaat 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34467 aataccccaagcaaaagtgcagaaactcaaccaaatccgaggtttgattctcaatagaat 34408

                                                                         
Query: 169   caaattatgagggatcatacctaacaaatatccaacggtgaaacacgtattagcgatatt 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34407 caaattatgagggatcatacctaacaaatatccaacggtgaaacacgtattagcgatatt 34348

                                                                         
Query: 229   gaactgatttgacttgaacccgagatcctctttcataccggaaacataagcattggtgaa 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34347 gaactgatttgacttgaacccgagatcctctttcataccggaaacataagcattggtgaa 34288

                                                                         
Query: 289   accgattctatccacatagttgatccaatattgcaagcagacaaaagaaagaacggtcaa 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34287 accgattctatccacatagttgatccaatattgcaagcagacaaaagaaagaacggtcaa 34228

                                                                         
Query: 349   atcgacccgaaatagcttgcccatggcgtgattacactttgatgttattcagctgtcctt 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34227 atcgacccgaaatagcttgcccatggcgtgattacactttgatgttattcagctgtcctt 34168

                                                                         
Query: 409   ctaggactcttggcggtgtataccagtacctatttctctctgaagagatgtcacaatctg 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34167 ctaggactcttggcggtgtataccagtacctatttctctctgaagagatgtcacaatctg 34108

                                                                         
Query: 469   ttgactcaccaactttaagatgatcaaaaaaccggaacgatatagtacaatttgatgaca 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34107 ttgactcaccaactttaagatgatcaaaaaaccggaacgatatagtacaatttgatgaca 34048

                                                                         
Query: 529   ctatttatatacaaacagataataagtacgtataaataccattcaacactcaaacgacag 588
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34047 ctatttatatacaaacagataataagtacgtataaataccattcaacactcaaacgacag 33988

                                                                         
Query: 589   aattcgaagctctcgatctgcagaatcttcangtttcttcagaaccatccaatagatcgn 648
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 33987 aattcgaagctctcgatctgcagaatcttcaggtttcttcagaaccatccaatagatcgt 33928

                                                                         
Query: 649   ttatctcttgttcttgcttgctgttacgaagttttttcacgtgattgatcttctcagtca 708
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 33927 ttatctcttgttcttgcttgctgttacgaggttttttcacgtgattgatcttctcagtca 33868

                                                                         
Query: 709   aatactcattgatatcgtcttgtaatccggtcaattgcattcgcagttgcagaagccggg 768
             |||||||||||||||||||||||||||||||||||||||| ||||||||| |||  || |
Sbjct: 33867 aatactcattgatatcgtcttgtaatccggtcaattgcatccgcagttgc-gaaagcgtg 33809

                                                                      
Query: 769   gattattgatcgattcctgtcttactattgacggtttcaaccttttttggggcacta 825
             |  |||||||||||||||||||||||||||||| | |||||||| |||||| |||||
Sbjct: 33808 gtatattgatcgattcctgtcttactattgacgttatcaaccttctttgggtcacta 33752


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5919
Number of Sequences: 1807
Number of extensions: 5919
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)