BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF07FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1162 0.0
>3x_Contig1687
Length = 12800
Score = 1162 bits (586), Expect = 0.0
Identities = 655/670 (97%), Gaps = 6/670 (0%)
Strand = Plus / Minus
Query: 89 ctgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatgga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4104 ctgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatgga 4045
Query: 149 aaagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4044 aaagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgac 3985
Query: 209 atgaaaccattatacttaactcgtataaagagaaactcagcaaatacaagaaggttgctc 268
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 atgaaaccag-atacg-aactcgtataaagagaaactcagcaaatacaagaaggttgctc 3927
Query: 269 atcttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacgg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 atcttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacgg 3867
Query: 329 cggcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 cggcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatg 3807
Query: 389 gggcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 gggcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctc 3747
Query: 449 cgcctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgtt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 cgcctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgtt 3687
Query: 509 ctggcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgatt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 ctggcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgatt 3627
Query: 569 ctctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 ctctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttct 3567
Query: 629 tgtcatatgatccagctttcgaaatttatgaacaattgagtagagcgtttttggacactt 688
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct: 3566 tgtcatatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacacct 3507
Query: 689 acctttaca-gacttcaattaaaatatccactttttagattaacaagaagatttacactt 747
|| |||||| |||||||||| |||||||||| || ||||| |||||| ||||||||||||
Sbjct: 3506 ac-tttacaagacttcaattcaaatatccac-ttctagatgaacaag-agatttacactt 3450
Query: 748 tccactatga 757
||||| ||||
Sbjct: 3449 tccacaatga 3440
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6958
Number of Sequences: 1807
Number of extensions: 6958
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)