BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZF09RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1721                                                        1306   0.0  

>3x_Contig1721 
          Length = 17834

 Score = 1306 bits (659), Expect = 0.0
 Identities = 699/709 (98%), Gaps = 3/709 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   cgacctttgcctctggagtactttcgactttagaagaagctgaggccttcgaggtaattt 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3099 cgacctttgcctctggagtactttcgactttagaagaagctgaggccttcgaggtaattt 3158

                                                                        
Query: 108  ctgtagacgaattttcttccttttgctgtggaacctcttcagcagccttgtcaggttcag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3159 ctgtagacgaattttcttccttttgctgtggaacctcttcagcagccttgtcaggttcag 3218

                                                                        
Query: 168  aatcggtgttagcttccaccttcacaacaacttctggttgttgtgatgctttcacgatct 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3219 aatcggtgttagcttccaccttcacaacaacttctggttgttgtgatgctttcacgatct 3278

                                                                        
Query: 228  tttcatcctcagagtcccatactgaactttcttcgcttgggttttcagcctcattatcag 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279 tttcatcctcagagtcccatactgaactttcttcgcttgggttttcagcctcattatcag 3338

                                                                        
Query: 288  catctaagtcagaagccttttgcagcaacttgtttacagaagcatccttactcaatagtt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3339 catctaagtcagaagccttttgcagcaacttgtttacagaagcatccttactcaatagtt 3398

                                                                        
Query: 348  cgtctacttggttcttgccagtgtcttttgctggtggcatttctttcctagctggactac 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3399 cgtctacttggttcttgccagtgtcttttgctggtggcatttctttcctagctggactac 3458

                                                                        
Query: 408  cagaactagatgatgaagcaggacttggtgatgttttcttacttttattactaggcgtta 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3459 cagaactagatgatgaagcaggacttggtgatgttttcttacttttattactaggcgtta 3518

                                                                        
Query: 468  gttgaattatcacttcatgctttacttctgtggatggggattgagatggagattgagatg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3519 gttgaattatcacttcatgctttacttctgtggatggggattgagatggagattgagatg 3578

                                                                        
Query: 528  gagattttggctgttctttagactctgaagttaattctttgactggtttcttggaatctg 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3579 gagattttggctgttctttagactctgaagttaattctttgactggtttcttggaatctg 3638

                                                                        
Query: 588  tgaattcaggttcgcttncatcatataaagtttggagtttgaac-anatttggccatcaa 646
            ||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 3639 tgaattcaggttcgcttccatcatataaagtttggagtttgaacaaaattgggccatcaa 3698

                                                                        
Query: 647  cagatttaccct-aacccattcagctgcagataatgctggtttactagaaggagcatcaa 705
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3699 cagatttaccctcaacccattcagctgcagataatgctggtttactagaaggagcatcag 3758

                                                             
Query: 706  gataaatgtcatcttgggaaaaccttcgactttctatgcacatagaaag 754
            ||||||||||||||| |||||||||  ||||||||| ||||||||||||
Sbjct: 3759 gataaatgtcatctt-ggaaaacctcggactttctaggcacatagaaag 3806


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6940
Number of Sequences: 1807
Number of extensions: 6940
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)