BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF10FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1463 0.0
>3x_Contig1795
Length = 38452
Score = 1463 bits (738), Expect = 0.0
Identities = 784/793 (98%), Gaps = 5/793 (0%)
Strand = Plus / Plus
Query: 87 tgactgtttgcacccatgcacccatgaatattttataatcactctactatcctttttaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5891 tgactgtttgcacccatgcacccatgaatattttataatcactctactatcctttttaat 5950
Query: 147 tttcttcattcccaaaacaggaattttactctcaagtttcctgtgaaaatgatggccata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5951 tttcttcattcccaaaacaggaattttactctcaagtttcctgtgaaaatgatggccata 6010
Query: 207 ctactggcagccattttcccgtttgcagctggggagtttcctgcctggccgcaaccacac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6011 ctactggcagccattttcccgtttgcagctggggagtttcctgcctggccgcaaccacac 6070
Query: 267 cagacaggacgctccccgtttggtccaacacttcgagcgtagagacccgctcggttttgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071 cagacaggacgctccccgtttggtccaacacttcgagcgtagagacccgctcggttttgg 6130
Query: 327 tcttactcattgtccagctgaaccttcctctcccctcggtgtctctgtttccctttgacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 tcttactcattgtccagctgaaccttcctctcccctcggtgtctctgtttccctttgacg 6190
Query: 387 gcaaggaggtgtgtctgtgtttcatcctgagcgtatctccctctcccgtatgctaggcta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 gcaaggaggtgtgtctgtgtttcatcctgagcgtatctccctctcccgtatgctaggcta 6250
Query: 447 ggctaggctaggtccactctgcaaccactcagggctggcctgccggaatctccttcactg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 ggctaggctaggtccactctgcaaccactcagggctggcctgccggaatctccttcactg 6310
Query: 507 ggaaattctgaccggtccctcgatcgctccttctctcactagtagtttgtgttggaatcg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 ggaaattctgaccggtccctcgatcgctccttctctcactagtagtttgtgttggaatcg 6370
Query: 567 aagtttcgattcatttcactaaacaaaaaagtattgaaattcggtatatgaatgtaaagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 aagtttcgattcatttcactaaacaaaaaagtattgaaattcggtatatgaatgtaaagt 6430
Query: 627 aacatttgtattctatataatcatatagcaagaacatcaagcacacagatatatcaacaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6431 aacatttgtattctatataatcatatagcaagaacatcaagcacacagatatatcaacaa 6490
Query: 687 gatggctcaagtatgtgggaaacaagtgctatatccataccctgnagaaattacgaaaga 746
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6491 gatggctcaagtatgtgggaaacaagtgctatatccataccctggagaaattacgaaaga 6550
Query: 747 aaaggattgactcagcgatcatgacgacgaaatata-taattggcgacatctattggcaa 805
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6551 aaaggattgactcagcgatcatgacgacgaaatatagtaattggcgacatctattggcaa 6610
Query: 806 tttaaaa-gttatgaatgaatt-acaccatagcataattgag-acagtctgga-cagatg 861
| ||||| || ||||||||||| |||||||||||||| |||| |||||||||| ||||||
Sbjct: 6611 tataaaatgtaatgaatgaattaacaccatagcataaatgagaacagtctggaccagatg 6670
Query: 862 ctgttcgattcca 874
|||||||||||||
Sbjct: 6671 ctgttcgattcca 6683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4999
Number of Sequences: 1807
Number of extensions: 4999
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)