BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF10RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig587 1318 0.0
>3x_Contig587
Length = 1528
Score = 1318 bits (665), Expect = 0.0
Identities = 755/775 (97%), Gaps = 10/775 (1%)
Strand = Plus / Minus
Query: 48 ctctagtcaatgttggtttgcctctgattagatccattaa---attcccagttctggtca 104
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 1020 ctctagtcaatgttggtttgcctctgattagatccattaagatatccacagttctggtca 961
Query: 105 gagtctttagagttgtcaaacgagctgctgactgagatgttt-aacatagaaattaataa 163
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 960 gagtctttagagttgtcaaacgagctgctgactgagatgtttcaacatagaaattaataa 901
Query: 164 atgattccagtctcgtatataaaacggtcaaaaattggtttgcctgtgaacacaatacaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 atgattccagtctcgtatataaaacggtcaaaaattggtttgcctgtgaacacaatacaa 841
Query: 224 caggattattcgaacataatactgctacggcgtggcatcctttccaaatctggtatggtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 caggattattcgaacataatactgctacggcgtggcatcctttccaaatctggtatggtt 781
Query: 284 cgctagatcttaaaagtttcaacagtttggcaacgaatacaccaatgtcagatttcaaca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 cgctagatcttaaaagtttcaacagtttggcaacgaatacaccaatgtcagatttcaaca 721
Query: 344 aagattggttaacataggtgggagatctcaaagtttgcagaatagaacggaattgactac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aagattggttaacataggtgggagatctcaaagtttgcagaatagaacggaattgactac 661
Query: 404 cttctgattcttcaattagcttggctaacgaacttaatgggacggtaactgtagccatga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cttctgattcttcaattagcttggctaacgaacttaatgggacggtaactgtagccatga 601
Query: 464 tgtagatgaagttgagtattccaaatcacaatctgaatttggttacaaggtcttcaacaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgtagatgaagttgagtattccaaatcacaatctgaatttggttacaaggtcttcaacaa 541
Query: 524 tgtcaagagattattccaacttcttgaacaatggtagtaaatatagaaagctactttcac 583
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 tgtcaagagattattccaacttcttgaacaatggtagtaaatatagaagcctactttcac 481
Query: 584 ctattcgcactgataacaaccgataaatacttatgatcaattcaagattttatcactagc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctattcgcactgataacaaccgataaatacttatgatcaattcaagattttatcactagc 421
Query: 644 tctcaagccttctcttcacaatgcaatgcgatgagcttcaaagttgaattttttcattct 703
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 tctcaagccttctcttcacaatgcaatgcgatgagcttcaaagttg-attttttcattct 362
Query: 704 tcaatcgaattggagatttctttttaccttgggtagcgcatacacaatacatgtgaaatt 763
||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| | |
Sbjct: 361 tcaatcg-attggagatttcttttta-cgtgggtagcgcatacacaatacatgtgata-t 305
Query: 764 ttgctttttggtttaacatttaaaataatgcccgtatgt-aagaattatgccttg 817
|||||||||||| || || ||||||||||| |||||||| |||||||| ||||||
Sbjct: 304 ttgctttttggtatagcaattaaaataatg-ccgtatgtcaagaattaggccttg 251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7510
Number of Sequences: 1807
Number of extensions: 7510
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)