BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1528 0.0
>3x_Contig1061
Length = 4663
Score = 1528 bits (771), Expect = 0.0
Identities = 831/845 (98%), Gaps = 6/845 (0%)
Strand = Plus / Plus
Query: 87 tatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgtttgatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3244 tatcgattattcatttttgatttgactgatctatagagtgattgagaatggcgtttgatt 3303
Query: 147 ttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 ttcagcaagtaacaatctttactattacttccacaggcacaatcacaacttcctagaatg 3363
Query: 207 gtgtctatggtttgtatgaaaagatacctttgtggctcttcaatggaatctatgctctca 266
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3364 gtgtctatggaatgtatgaaaagatacctttgtggctcttcaatggaatctatgctctca 3423
Query: 267 ttatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtgaagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 ttatgatttattaacttccatattggatgtctcaggtcccagtcccatttgatgtgaagt 3483
Query: 327 tcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggtta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3484 tcttcacctttatcaatgaatcttagagctctaagaacgaactttatctcatcctggtta 3543
Query: 387 ttggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtctcaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3544 ttggaattagtcaatttgattgtgactagttcaacattgggattgcatgatcgtctcaag 3603
Query: 447 tatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatgaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604 tatctcgttaaatttccacttaacctggcatcaatataaatcggccagtggggatgaata 3663
Query: 507 atgactttaggttttgcagttccccagactctatagttatttcttggatcttctaagtat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3664 atgactttaggttttgcagttccccagactctatagttatttcttggatcttctaagtat 3723
Query: 567 ttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcacatcct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3724 ttcctttggaaatcaatctctcctaagaattcatcgatgtagtctccttcatcacatcct 3783
Query: 627 tgcttcaagtatacagctaacttggggtatccagggaacaatcttgagtgattactgtca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3784 tgcttcaagtatacagctaacttggggtatccagggaacaatcttgagtgattactgtca 3843
Query: 687 gaatatggtttaatttcaatcggaataggtttgaacgttaatttatgataaggtataacc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3844 gaatatggtttaatttcaatcggaataggtttgaacgttaatttatgataaggtataacc 3903
Query: 747 cagtcgtcatcagcgtggtcttttacgaaaagttcaacgtatttatctttgtaatcattt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3904 cagtcgtcatcagcgtggtcttttacgaaaagttcaacgtatttatctttgtaatcattt 3963
Query: 807 gaagtcaaa-ggagatacactgntagataagcttctttagcatttattaaaacaatgttc 865
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3964 gaagtcaaagggagatacactgtaggataagcttctttagcatttattaaaacaatgttc 4023
Query: 866 gttagaaggatctgcgggatggaatggggcctctgggtctatacgatggtcccgtcgctt 925
|| || ||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 4024 gtaag-aggatctgc-ggatggaat--ggcctctggttctatacgatggt-ccgtcgctt 4078
Query: 926 tagaa 930
||||
Sbjct: 4079 cagaa 4083
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6351
Number of Sequences: 1807
Number of extensions: 6351
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)