BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1443 1283 0.0
>3x_Contig1443
Length = 8994
Score = 1283 bits (647), Expect = 0.0
Identities = 735/758 (96%), Gaps = 5/758 (0%)
Strand = Plus / Plus
Query: 46 ctttcgcaaaaactttagaccgtggtgaaaaattgtttgaaaagtatgctgaagatgctt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2727 ctttcgcaaaaactttagaccgtggtgaaaaattgtttgaaaagtatgctgaagatgctt 2786
Query: 106 tgaagaaagcagacaagactttggatggtaaacaagtctggagactatacgatacttatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2787 tgaagaaagcagacaagactttggatggtaaacaagtctggagactatacgatacttatg 2846
Query: 166 gtttccctgtcgatttgactgaattgatggctgaagaacagggcttaaagatcgatacaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2847 gtttccctgtcgatttgactgaattgatggctgaagaacagggcttaaagatcgatacaa 2906
Query: 226 tcggttttgagaaagctaaacaggaatcatacgaggcttctaagaaaggtggtaagaagg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2907 tcggttttgagaaagctaaacaggaatcatacgaggcttctaagaaaggtggtaagaagg 2966
Query: 286 gtgcatctgatttgatcagattaaacgttcatgaattgtctcaacttaacggtgataatg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967 gtgcatctgatttgatcagattaaacgttcatgaattgtctcaacttaacggtgataatg 3026
Query: 346 tcgctaagactgatgattcatctaagtatgggaccgaaaacgttgaagccactattttga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3027 tcgctaagactgatgattcatctaagtatgggaccgaaaacgttgaagccactattttga 3086
Query: 406 gaatatatgatggtgagaaattcgttgactctatgaccgaaattggtaagcaatatggtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3087 gaatatatgatggtgagaaattcgttgactctatgaccgaaattggtaagcaatatggtg 3146
Query: 466 ttattctagacaaaacttgtttttatgccgaacaaggtggtcaagagttcgatacaggta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3147 ttattctagacaaaacttgtttttatgccgaacaaggtggtcaagagttcgatacaggta 3206
Query: 526 agttggttatcgatggtgaagcagaattcaacgtcgacaatgttcaagcctacaacggtt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3207 agttggttatcgatggtgaagcagaattcaacgtcgacaatgttcaagcctacaacggtt 3266
Query: 586 atgttttccataccggttctcttggtgacggtaaactatctattggtgacagtataattg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3267 atgttttccataccggttctcttggtgacggtaaactatctattggtgacagtataattg 3326
Query: 646 ctccttacgaagagctacgtcgtcatcccctta-aaat-attacactggtacac-tntct 702
|| |||||||||||||||||||||||||||| | |||| || |||||||||||| | |||
Sbjct: 3327 cttcttacgaagagctacgtcgtcatcccctaagaaataatcacactggtacacatatct 3386
Query: 703 ttgactttgctctgaaagaattgtttggtaatgattttcgatcaaaaaggtttccttatt 762
| ||||||||||||||||| |||| |||||||| | |||||| |||||| ||||||| |
Sbjct: 3387 tgaactttgctctgaaagaagtgttgggtaatga-tgtcgatc-aaaagggttccttagt 3444
Query: 763 tgccccgcaaagattgaaattcgattttttgcacaaga 800
||| ||| ||| |||| ||||||||| | ||||||||
Sbjct: 3445 tgcaccggaaaagttgagattcgatttctcgcacaaga 3482
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7872
Number of Sequences: 1807
Number of extensions: 7872
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)