BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF12FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1495 0.0
>3x_Contig1605
Length = 12373
Score = 1495 bits (754), Expect = 0.0
Identities = 838/862 (97%), Gaps = 3/862 (0%)
Strand = Plus / Minus
Query: 86 ccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10445 ccaggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttt 10386
Query: 146 tgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10385 tgtatcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtc 10326
Query: 206 ttcctcttctattttttcttataatagatggtatgttaaaggaactcctctttcaaccat 265
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10325 ttcctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccat 10266
Query: 266 tttctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10265 tttctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttcca 10206
Query: 326 agttatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10205 agttatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttc 10146
Query: 386 gcgatatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10145 gcgatatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaa 10086
Query: 446 attataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10085 attataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctct 10026
Query: 506 gcaggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10025 gcaggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagc 9966
Query: 566 cgttttcaatggcgcaattcgtaaattagaaggatgtagcaaattcttaagaagtttcgg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965 cgttttcaatggcgcaattcgtaaattagaaggatgtagcaaattcttaagaagtttcgg 9906
Query: 626 tattattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9905 tattattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtcc 9846
Query: 686 aatatagtcttcgaactcttgaatatcgcttactacttcttctgttattatgggaatttc 745
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 9845 aatatagtcttcgaactcttgaatatcgcttagtacttcttctgttattttgggaatttc 9786
Query: 746 agtgaaacattccctctcaaaaaaacgctttttagcgatcagaggaacattatcctcaga 805
||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||
Sbjct: 9785 agtgaaacattccctttcaaagaaacgctttttagcgacaagagaaacattatcctcaga 9726
Query: 806 gacttg-acaagactagaaataacgttagcaacatcttcactggatatgcagaatattct 864
|||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 9725 gacttgaaaaagactagaaataagtttagcaacatcttcactggatatggagaatattct 9666
Query: 865 ttcgcgtgcgtcttgagttttcaaa-ttctttttagtgtgttggaaaa-tgagccgctcg 922
|||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 9665 ttcgtgtgcgtcttgagttttcaaagttctttttagtgtgttggaaaattgagcggctcg 9606
Query: 923 gttaatgtcatatttgctaact 944
||| ||||||||||||||||
Sbjct: 9605 tttatagtcatatttgctaact 9584
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7974
Number of Sequences: 1807
Number of extensions: 7974
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)