BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZF12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1556 0.0
>3x_Contig1798
Length = 38968
Score = 1556 bits (785), Expect = 0.0
Identities = 843/856 (98%), Gaps = 5/856 (0%)
Strand = Plus / Minus
Query: 50 caagcttaagtaccttagtattcgtggggaggaacgaataattgagacagatgagtatct 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33048 caagcttaagtaccttagtattcgtggggaggaacgaataattgagacagatgagtatct 32989
Query: 110 taaacctatcgaattgaacaaggcgtccagtacagatgtagtgataaacaatgatcctta 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32988 taaacctatcgaattgaacaaggcgtccagtacagatgtagtgataaacaatgatcctta 32929
Query: 170 tggggaaataaactaccttccttcatttgttgacatccatgctaagaggaaactgttcaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32928 tggggaaataaactaccttccttcatttgttgacatccatgctaagaggaaactgttcaa 32869
Query: 230 agaataccttcatcgcagtttgtgagttgataaagattggtaacttaaacgcatacatat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32868 agaataccttcatcgcagtttgtgagttgataaagattggtaacttaaacgcatacatat 32809
Query: 290 atataatatgtactggggaattacataatataatgactttgcaataataactaacgggag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32808 atataatatgtactggggaattacataatataatgactttgcaataataactaacgggag 32749
Query: 350 tagatacagggccgatagccaatataggcacttcaccaatcacattaggacgtcagttat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32748 tagatacagggccgatagccaatataggcacttcaccaatcacattaggacgtcagttat 32689
Query: 410 cattgtgattgtacgtgtaaaagggatttggaggatcctgtgtactctgtgtactatttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32688 cattgtgattgtacgtgtaaaagggatttggaggatcctgtgtactctgtgtactatttt 32629
Query: 470 gttcaatgaatcgaggatctgatgatgcagactgtttatatcgctgaggtggcgtcatct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32628 gttcaatgaatcgaggatctgatgatgcagactgtttatatcgctgaggtggcgtcatct 32569
Query: 530 tatgcaatgagtgtgataaaatatcattccgtgtcgcacttgggttagaaatgccttcta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32568 tatgcaatgagtgtgataaaatatcattccgtgtcgcacttgggttagaaatgccttcta 32509
Query: 590 tctctgctaatctactcatttttgcagatgatttcaaaagatcttgatgttgcgtctgta 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32508 tctctgctaatctactcatttttgcagatgatttcaaaagatcttgatgttgcgtctgta 32449
Query: 650 tctcgcgttggagcttgtactcttctaaatgttcttgtagctcggaaatatcatcggaag 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32448 tctcgcgttggagcttgtactcttctaaatgttcttgtagctcggaaatatcatcggaag 32389
Query: 710 tcaaggataaaactgtaggatcacgccttancataatggttggtatttatgccgattcta 769
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 32388 tcaaggataaaactgtaggatcacgccttagcataatggttggtatttatgccgattcta 32329
Query: 770 tgttataattctacgttatgctatataaattgacatcttaagaaac-tgactgcttttgt 828
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 32328 tgttataattctacgttatgctatataaattgacatcttaagaaacttgactgcttttgt 32269
Query: 829 g-tattaaatttcggtgatg-aatatgatgcgaaagaataagc-aaaccttcccatact- 884
| ||||||||| | ||||| ||||||||||||||| | |||| |||||||| ||||||
Sbjct: 32268 gttattaaattcggttgatgaaatatgatgcgaaaggaaaagcaaaaccttcacatacta 32209
Query: 885 tttcaaatgaacgtat 900
|| |||||||||||||
Sbjct: 32208 ttacaaatgaacgtat 32193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7044
Number of Sequences: 1807
Number of extensions: 7044
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)