BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG01FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 1503 0.0
>3x_Contig1490
Length = 9411
Score = 1503 bits (758), Expect = 0.0
Identities = 812/826 (98%), Gaps = 3/826 (0%)
Strand = Plus / Plus
Query: 90 tctcacaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaattt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 tctcacaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaattt 3572
Query: 150 gcggataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgacc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3573 gcggataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgacc 3632
Query: 210 aagaatggtttttttgaggatatgggtgctaggccattgaacagattaattcaaaccgag 269
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3633 aagaatggttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgag 3692
Query: 270 attttgaacccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3693 attttgaacccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtc 3752
Query: 330 aatgtagaagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3753 aatgtagaagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttca 3812
Query: 390 tcagaaattggtgatgaagacatggatttggacttggacgacgatgacgacttagaccta 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3813 tcagaaattggtgatgaagacatggatttggacttggacgacgatgacgacttagaccta 3872
Query: 450 gactgatctaaaatgaattacaaaaagaaaacatacaaacaaactcactcagtaataaaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3873 gactgatctaaaatgaattacaaaaagaaaacatacaaacaaactcactcagtaataaaa 3932
Query: 510 tttcagttcaacagtaccatcatatatagtgtaaagtacatatttttttcactttcttta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3933 tttcagttcaacagtaccatcatatatagtgtaaagtacatatttttttcactttcttta 3992
Query: 570 gtataatattttgacttttacatgttttcatgttcataagaggtgcaaaccaatggtgct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3993 gtataatattttgacttttacatgttttcatgttcataagaggtgcaaaccaatggtgct 4052
Query: 630 gctgttattcatacaagcgtactaactaagcattctggctgagtttgtattacatgttac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4053 gctgttattcatacaagcgtactaactaagcattctggctgagtttgtattacatgttac 4112
Query: 690 ttagatgggcagggttctttcagcctttttcactgatttcccaagtcagtaagtccaatt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 ttagatgggcagggttctttcagcctttttcactgatttcccaagtcagtaagtccaatt 4172
Query: 750 ttgcacatgattcaaaagattttgattggtctttcttcaaatcatgcttctttcctcacg 809
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4173 ttgcacatgattcaaaagaatttgattggtctttcttcaaatcatgcttctttcctcacg 4232
Query: 810 aatgttaatctttcggc-tttttcctctttttccctcg-tccgtgggattattggctgag 867
|||||||||| |||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 4233 aatgttaatc-ttcggcttttttcctcttcttccctcgttccgtggagttattggctgag 4291
Query: 868 taacatcccatatacttttcgttctgggcatcgtttaacatgcttg 913
||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct: 4292 taacatcccatatacctttcgttctgggcatcgctaaacatgcttg 4337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8320
Number of Sequences: 1807
Number of extensions: 8320
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)