BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG01RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1241 0.0
>3x_Contig1604
Length = 15703
Score = 1241 bits (626), Expect = 0.0
Identities = 651/658 (98%), Gaps = 1/658 (0%)
Strand = Plus / Minus
Query: 48 taatttcttttcca-tggtggcgtgccagcttcttctcgctcttgttttggttttagaac 106
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11124 taatttcttttccaatggtggcgtgccagcttcttctcgctcttgttttggttttagaac 11065
Query: 107 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 cttgaatactctgagatacagatcatgggtagaaccagtctcactcaaaacaacctcttg 11005
Query: 167 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11004 atgtagttcccaatgctcttcggagaaagactgaaagcagcgtagacagatgaataatga 10945
Query: 227 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10944 atgttcacgaccctcatctttattcttcatcgtttcaaaacaataaacacagtcatctgt 10885
Query: 287 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10884 atcaatgaccctgggtacattgatatcaaggatatcagaaccagacatctttaatttgaa 10825
Query: 347 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10824 ggcagatatgatgcgttgtggagctttgttcttatatattgatgttctatttcttgcaca 10765
Query: 407 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10764 ctcattttaaaggatcaaactccagtaatttcaaattttaaaccatgccgtaattatgga 10705
Query: 467 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10704 aaatataacaaagaattaggtagatgaacgagttttaaagtagaacgcatcaattagagc 10645
Query: 527 tgtatttaacttatggcacccttatgtactggcgaagaacaatgccattctaagagagga 586
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10644 tgtatttaacttatggcacccttatgtactgccgaagaacaatgccattctaagagagga 10585
Query: 587 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttaccagtgttcgatgtacta 646
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10584 taatgaaatttattgcgtgtaggttaatcgtaagtgtatttacaagtgttcgatgtacta 10525
Query: 647 tataatcgaaatgtatagtttttatagtttagcagaagaagatttccctctttagaaa 704
|||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||
Sbjct: 10524 tataatcgaaatgtatagtttttatagtttagcagaggaagttttccatcttaagaaa 10467
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7964
Number of Sequences: 1807
Number of extensions: 7964
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)