BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG02RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1108 1318 0.0
>3x_Contig1108
Length = 6240
Score = 1318 bits (665), Expect = 0.0
Identities = 788/821 (95%), Gaps = 6/821 (0%)
Strand = Plus / Plus
Query: 48 gtgcacttcacaaagcacattatgtcccatttattagtgtacgatttcatggagcacgat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3918 gtgcacttcacaaagcacattatgtcccatttattagtgtacgatttcatggagcacgat 3977
Query: 108 ctagcaaatgtgctgatcgtggtcaaaccttcgaccaaaagtcttgtattcgtttcgctg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 ctagcaaatgtgctgatcgtggtcaaaccttcgaccaaaagtcttgtattcgtttcgctg 4037
Query: 168 tcaggaacgaaaccaaaactattaggcgatgctaagaaatttgtatccaaagtgaactcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 tcaggaacgaaaccaaaactattaggcgatgctaagaaatttgtatccaaagtgaactcc 4097
Query: 228 ttgtcaaagaataaaggatctatttataccttaaagaataaatccatcttaaaatcagac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 ttgtcaaagaataaaggatctatttataccttaaagaataaatccatcttaaaatcagac 4157
Query: 288 gatgtggcatggttagaacagttgagctttgattttttacagatactggctggtggtatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 gatgtggcatggttagaacagttgagctttgattttttacagatactggctggtggtatt 4217
Query: 348 gactctcaaacgaacatcaaatgtgagtatctccttggaacagaatttcaaaaaaaggtt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 gactctcaaacgaacatcaaatgtgagtatctccttggaacagaatttcaaaaaaaggtt 4277
Query: 408 tgggagactacaaagactatcaaggccggtgctacgatttcttatcagcaattagccgtt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 tgggagactacaaagactatcaaggccggtgctacgatttcttatcagcaattagccgtt 4337
Query: 468 ctgctagggaatccaaaagctgtgagagccattggttctgctctagcgaaaaacaacatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4338 ctgctagggaatccaaaagctgtgagagccattggttctgctctagcgaaaaacaacatt 4397
Query: 528 gctgtcgtgattccgtgccatagaatcatcggttctaagggtaaactgacaggattcaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4398 gctgtcgtgattccgtgccatagaatcatcggttctaagggtaaactgacaggattcaga 4457
Query: 588 tggggaaattgact-aaagaatcactactaaggcaggaaacagcaatttagtggactgat 646
||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4458 tggggaattgaactaaaagaatcactactaaggcaggaacaagcaatttagtggactgat 4517
Query: 647 agcttttgaatttttttttttttatttgc-accaaccgtgtttgaaac-gcacacaaat- 703
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||
Sbjct: 4518 agcttttgaattttttttttcttatttgcaaccaaccgtgtttgaaacggcacacaaatc 4577
Query: 704 ccaaatgtgttcaaggattac-tgaccca-tcgttacggttctcttctgggggtggtttc 761
||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| ||
Sbjct: 4578 ccaaatgtgttcaaggattacttgacccagtcgttacggttctcttctgtgtgtgtttca 4637
Query: 762 ataaaaaggcttttggcccctaattcttttggctttatttggccttccaaaggggtgcgt 821
|||||| | ||||| | | ||| |||||||| ||||||||| | ||| | |||| |||||
Sbjct: 4638 ataaaatgtctttttgtctctatttcttttgtctttatttgtctttcgagagggttgcgt 4697
Query: 822 ctgcaagaaaaaattgggaaatccgggggagttgaatcatt 862
|||||||||||||| |||||||| || |||||||||||||
Sbjct: 4698 ctgcaagaaaaaatatggaaatcctggagagttgaatcatt 4738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,965
Number of Sequences: 1807
Number of extensions: 13965
Number of successful extensions: 287
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)