BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZG03FM1.SCF screened BAC_end
         (878 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1803                                                         464   e-130

>3x_Contig1803 
          Length = 52241

 Score =  464 bits (234), Expect = e-130
 Identities = 248/250 (99%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                         
Query: 84    ctataacaagatctaactgggctttcgatagttcccagaaagctttttccaaatatctga 143
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26577 ctataacaagatctaactgggctttcgatagttcccagaaagctttttccaaatatctga 26518

                                                                         
Query: 144   caccaccatgagccatcttggtagatttggaagaagtaccagaagcaaaatcgttcattt 203
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26517 caccaccatgagccatcttggtagatttggaagaagtaccagaagcaaaatcgttcattt 26458

                                                                         
Query: 204   caaccaaggctacgttcataacctctagtggaagcatccaaagcgcaaccggtaccagta 263
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 26457 caaccaaggctacgttca-aacctctagtggaagcatccaaagcgcaaccggtaccagta 26399

                                                                         
Query: 264   gcaccaccaccgataatcaatacatcaaacttgtccgttttggacaaccttagacaaaag 323
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 26398 gcaccaccaccgataatcaatacatcaaacttgtccgttttggacaacc-tagacaaaag 26340

                       
Query: 324   attggctcta 333
             ||||||||||
Sbjct: 26339 attggctcta 26330


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,231
Number of Sequences: 1807
Number of extensions: 42231
Number of successful extensions: 3456
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)